View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_101 (Length: 202)
Name: NF11932_low_101
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_101 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 751000 - 751169
Alignment:
| Q |
18 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnn |
117 |
Q |
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| T |
751000 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaa--aaaaat |
751097 |
T |
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| Q |
118 |
nnntgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaaatgttgtgaattct |
189 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751098 |
aaatgaaaatgaggcatagaactatatttcaaactcactataagttttagaaagctaaatgttgtgaattct |
751169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 679193 - 679365
Alignment:
| Q |
18 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaag-nnnnnn |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
679193 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctcagaactagaaagaaaaaaa |
679292 |
T |
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| Q |
117 |
nnnntgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaaatgttgtgaattct |
189 |
Q |
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| T |
679293 |
aaaatgaaaatgaggcatataactacatttcaaactcactataagttttagaaagctaaatgttgtgaattct |
679365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 9564819 - 9564909
Alignment:
| Q |
18 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaa |
108 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||| |||| |
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| T |
9564819 |
catgttgacattctgttaacaacctcaccttttcactgtcttggaaaatactcaaatacatacagcattcttctaattctcagaaccagaa |
9564909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2632769 - 2632700
Alignment:
| Q |
26 |
cattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattct |
97 |
Q |
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||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
2632769 |
cattctgttaacaacctcaccttttcattatcttggaaaatactcaaatat--gcagcattcttctaattct |
2632700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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