View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_12 (Length: 594)
Name: NF11932_low_12
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 8e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 318 - 502
Target Start/End: Complemental strand, 50626190 - 50626006
Alignment:
| Q |
318 |
attataggtgtgatcatactagtactaatgcatcgaattccatcacaatttcgtagttaagtgtgtttggacgagagtatattatttggatgggtgacct |
417 |
Q |
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| T |
50626190 |
attataggtgtgatcattctagtactaatgcattagattccatcacaattttgtagttaagtgtgtttggacgagagtatattattaagatgggtgacct |
50626091 |
T |
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| Q |
418 |
cctgcgaagttccgaccctttttaagtaaccaaaaataaaatttaacaattatttttgcgggatagttagattgttatataatgc |
502 |
Q |
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| T |
50626090 |
cctgcgaagttccgaccctttttaagtaaccaaaaataaaatttaacaattatttttgcggaatagttagattgttatataatgc |
50626006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 50631348 - 50631219
Alignment:
| Q |
15 |
gatagtgagaggaagaatcacatgtctatagctattccatagcacttatctatatatacagtccaaattggcatgattgtatctcaactgaaactggcaa |
114 |
Q |
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| T |
50631348 |
gatagtgagatgaagaatcacatgtctatagctattccatagcacttatctatatatacagtccaaattggcatgattgtatctcaactgaaactggcaa |
50631249 |
T |
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| Q |
115 |
gagtcacaccaacattgaagtgggaattta |
144 |
Q |
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| T |
50631248 |
gagtcacaccaacattgaagtgggaattta |
50631219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 50631102 - 50630989
Alignment:
| Q |
209 |
acacaacaatgtgcattttatttaaaaatttcttcattttgagtttaaaaattatacatacttcaattgtaaatacagatattcatatctcatataatgg |
308 |
Q |
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| T |
50631102 |
acacaacaatgtgcattttatttaaaaatttcttcattttgagtttaaaaatta--catacttcaattgtaaatacagatattcatatctcatataatgg |
50631005 |
T |
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| Q |
309 |
tcatatttcattatag |
324 |
Q |
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| T |
50631004 |
tcatatttcattatag |
50630989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 427
Target Start/End: Complemental strand, 24620882 - 24620777
Alignment:
| Q |
323 |
aggtgtgatcatactagtactaatgcatcgaattccatcacaatttcgtagttaagtgtgtttggacgagagta-tattatttggatgggtgacctcctg |
421 |
Q |
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| T |
24620882 |
aggtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttgggcgagagtagtactagntggatgggtgacctcctg |
24620783 |
T |
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| Q |
422 |
cgaagt |
427 |
Q |
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||||| |
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| T |
24620782 |
ggaagt |
24620777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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