View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_14 (Length: 582)
Name: NF11932_low_14
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 25989041 - 25988473
Alignment:
| Q |
1 |
accgaacatcgccaataataatccgagaaagtaaaaagattgaatgcaactccgatgaatgtcaaaacccagata---cttcgatctgaagtgtcgatac |
97 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25989041 |
accgaacatcaccaataataatccgagaaagtaaaaagattgaatgtaactccgatgaatgtcaaaacccagatatgtcttcgatctgaagtgtcgatac |
25988942 |
T |
|
| Q |
98 |
tacataggttacaaacatctattcaaatttatgactaggaaacatctttccctatcatttttcaagtgatccataccaaaagatatcatataactctata |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
25988941 |
tacataggttacaaacatctattcaaatttatgactaggaaacatctttccctatcattttttaagtgatccataccaaaagacatcatataactctata |
25988842 |
T |
|
| Q |
198 |
tgtatcatataaaaaactatgcattcagcatcctagcaatgcatagaaatctgattccaagtgtaatcac--acnnnnnnnnntgctcacttgtgacaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
25988841 |
tgtatcatataaaaaactatgcattcagcatcctagcaatgcatagaaatctgattccaagtgtgatcacaaaaaaaaaaaaatgctcacttgtgacaaa |
25988742 |
T |
|
| Q |
296 |
acaaaacnnnnnnnnnnnctttctggggtttaccatataagg-nnnnnnnttgaagaagaaaccccatttccaaaaacatcatagttacttccaaagctt |
394 |
Q |
| |
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||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25988741 |
acaaaac--attttttttctttctggggtttaccatataaggaaaaaaaatggaagaagaaaccccatttccaaaaacatcatagttactttcaaagctt |
25988644 |
T |
|
| Q |
395 |
ggatctttaccacagnnnnnnnggtttaaacattacaacattgnnnnnnnnnnnnccccaataaagcattcatcaaagcaatgagaaagcaataaaatac |
494 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988643 |
ggatctttaccacagaaaaaaaggtttaaacattacaacattgaaaaaacaaaaaccccaataaagcattcatcaaagcaatgagaaagcaataaaatac |
25988544 |
T |
|
| Q |
495 |
aatgaggttaagcatcatcacctttgatcaagcttgtagcattttctgtgccacaaacaaacattgagatc |
565 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25988543 |
aatgaggttaagcatcatcacctttgatcaagcttgtagcattttctatgccacaaacaaacattgagatc |
25988473 |
T |
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