View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_low_15 (Length: 573)
Name: NF11932_low_15
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Complemental strand, 43963979 - 43963424
Alignment:
| Q |
14 |
agcacagaatatcctatgcaagtacacattacccaacaatgcaggatcaatcaacagatcacgagcaacccgaacaagctgtaatctagcatccttaact |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43963979 |
agcacacaatatcctatgcaagtacacattacccaacaatgcaggatcaatcaatagatcgcgagcaacccgaacaagctgtaatctagcatccttaact |
43963880 |
T |
|
| Q |
114 |
ctcataccaatatcaataagctgattctcaatttcttcacccttttggcaatgaggaatcatcgtcatttctcccaaaagagatacataccaatcaaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43963879 |
ctcataccaatatcaataagctgattctcaatttcttcacccttttggcaatgaggaatcatcgtcatttctcccaaaagagatacataccaatcaaaat |
43963780 |
T |
|
| Q |
214 |
caacaatgatctcataaacattcctaccacacgtggttaaaattgaacccaaaatctcattgcaaaactctggatcagatttcaatgcataattaagcaa |
313 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43963779 |
caacaataatctcataaagattcctaccacacgtggtcaaaatagaacccaaaatctcattgcaaaactctggatcagatttcaacgcataattaagcaa |
43963680 |
T |
|
| Q |
314 |
caccctagatatctccaccacattgctctcagagaccatagccatcaacaaccgcaaagactcgagtttaatattcaaatcttcatcatccagagattta |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
43963679 |
caccctagatatctccaccacattgctctcagacaccatagccatcaacaaccgcaaagactcaattttaatattcgaatcttcatcatccagagattta |
43963580 |
T |
|
| Q |
414 |
atcacagcatccttattctctagcactgcccacaaatgcttcggtgcagcaacggaaagcgcgtgcaaaccaagatacctaagattaggatcctgatcaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43963579 |
atcacagcatccttattctctagcactgcccacaaatgcttcggtgcagcaacggaaagcgcgtgcaaaccaagatacctaagattaggatcctgatcaa |
43963480 |
T |
|
| Q |
514 |
ccaacaactccctaattttcgtaaccgccaacttaacagcagactcatgatcactc |
569 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43963479 |
ccaacaactccctaatttttgtaaccgccaacttaacagcagactcatgatcactc |
43963424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University