View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_16 (Length: 570)

Name: NF11932_low_16
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_16
NF11932_low_16
[»] chr2 (5 HSPs)
chr2 (18-420)||(34121353-34121754)
chr2 (456-561)||(34121212-34121317)
chr2 (18-134)||(26312760-26312875)
chr2 (18-107)||(42294956-42295044)
chr2 (18-108)||(18609165-18609254)
[»] chr8 (2 HSPs)
chr8 (18-134)||(27423182-27423297)
chr8 (18-103)||(8120649-8120732)
[»] chr7 (5 HSPs)
chr7 (18-133)||(41620302-41620416)
chr7 (485-524)||(43354285-43354324)
chr7 (25-122)||(14585577-14585674)
chr7 (25-122)||(15999447-15999544)
chr7 (74-114)||(32402501-32402541)
[»] chr4 (4 HSPs)
chr4 (456-522)||(1034947-1035010)
chr4 (21-107)||(2915787-2915872)
chr4 (35-103)||(40087892-40087959)
chr4 (18-64)||(44343846-44343892)
[»] chr6 (3 HSPs)
chr6 (18-103)||(25436909-25436993)
chr6 (35-134)||(29178862-29178960)
chr6 (18-103)||(25461900-25461985)
[»] chr3 (1 HSPs)
chr3 (486-544)||(30129326-30129386)
[»] chr1 (2 HSPs)
chr1 (18-64)||(39311999-39312045)
chr1 (46-114)||(25291830-25291897)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 34121754 - 34121353
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaa 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34121754 tttaccaagttagttctttaaccacactttt-cacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaa 34121656  T
Q  118 tcttaaaatattatcttctcaaaggttatagttttttcctgtcaaattctacgtcatcgtttgccaacaaaaaacttagcctcaaaatggtttttgaaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34121655 tcttaaaatattatcttctcaaaggttatagttttttcctgtcaaattctacgtcatcgtttgccaacaagaaacttagcctcaaaatggtttttgaaag 34121556  T
Q  218 aagnnnnnnnnttggcgcatcacctcaatttcacgagtggttttatccacccaccagattgtatgtctagatagatgatttgtaagagttcttgcaatac 317  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34121555 aagaaaaaaaattggcgcatcacctcaatttcacgagtggttttatccacccaccggattgtatgtctagatagatgatttgtaagagttcttgcaatac 34121456  T
Q  318 cacctgttgtactaaatcccaacttgtagatgtagtacaggttgcactctttttcattatcattatcatatctcaaccacccatacgcactccttatgtg 417  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34121455 cacctgttgtactaaatcccaacttgtagatgtagtaccggttgcactctttttcattatcattatcatatctcaaccacccatacgcactccttatgtg 34121356  T
Q  418 gca 420  Q
    |||    
T  34121355 gca 34121353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 456 - 561
Target Start/End: Complemental strand, 34121317 - 34121212
Alignment:
Q  456 aaaaacaaaaccaacacaacaatccactctctcttctctccaccgcccacaccctccgtcaccaccaccgccgtcgacgtcgtcatcacacggctcatct 555  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  34121317 aaaaacaaaaccaacacagcaatccactctctcttctctccaccgcccacaccctccatcaccaccaccgccgtcgacatcgtcatcacacggctcatct 34121218  T
Q  556 ctctgc 561  Q
    ||||||    
T  34121217 ctctgc 34121212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 26312760 - 26312875
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaa 117  Q
    |||| ||||||| |||||||||||||  |||||| ||||||| |||||| | ||| |||||| ||||||||||| |||||||||||||| ||||||||||    
T  26312760 tttagcaagttaattctttaaccacatcttttcaattgaatctctaaatcttttt-tacatgttttatttacttgtgcattttactttaatgtcttagaa 26312858  T
Q  118 tcttaaaatattatctt 134  Q
    ||||||||| |||||||    
T  26312859 tcttaaaatcttatctt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 42295044 - 42294956
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttag 107  Q
    |||||||||||| ||| ||||| | |||||||||| |||||| |||||||  |||  ||||||||||||||||| |||||||||||||||    
T  42295044 tttaccaagttaattccttaacaatactttttcacatgaatctctaaattcttttg-acatgctttatttacttctgcattttactttag 42294956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 18609254 - 18609165
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagt 108  Q
    |||||||||||| ||| |||||||| | ||||| |||||||| ||| || | ||| |||||| ||||||| ||||||||| ||||||||||    
T  18609254 tttaccaagttaattccttaaccactcattttcccttgaatctctacatct-tttttacatgttttatttgcttttgcatcttactttagt 18609165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 27423297 - 27423182
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaa 117  Q
    ||||| |||||| ||  ||||||||||||||||||||||||| |||||| | ||| || ||||||||||||||| || ||||||||||||||||||||||    
T  27423297 tttactaagttaatttcttaaccacactttttcacttgaatctctaaatcttttt-tatatgctttatttacttctgaattttactttagtgtcttagaa 27423199  T
Q  118 tcttaaaatattatctt 134  Q
    |||||||| | ||||||    
T  27423198 tcttaaaacactatctt 27423182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 8120649 - 8120732
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttact 103  Q
    ||||||||||||  || ||||||||| ||||| ||||||||| |||| ||  ||| |||||||||||||||||| |||||||||||    
T  8120649 tttaccaagttaactccttaaccacatttttt-acttgaatctctaa-ttcctttttacatgctttatttacttctgcattttact 8120732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 41620302 - 41620416
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaa 117  Q
    |||||||||||| ||| ||||| | || |||| ||||||||| |||||||  ||| || ||||||||||||||| |||||||||  ||||| ||||||||    
T  41620302 tttaccaagttaattcgttaactaaacgtttttacttgaatctctaaattctttt-tatatgctttatttacttatgcattttatgttagtatcttagaa 41620400  T
Q  118 tcttaaaatattatct 133  Q
    ||||||||| ||||||    
T  41620401 tcttaaaattttatct 41620416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 524
Target Start/End: Complemental strand, 43354324 - 43354285
Alignment:
Q  485 tctcttctctccaccgcccacaccctccgtcaccaccacc 524  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43354324 tctcttctctccaccgcccacaccctccgtcaccaccacc 43354285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 14585674 - 14585577
Alignment:
Q  25 agttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaatctta 122  Q
    ||||| ||||||||||||   |||||||||||||| ||||| |   || ||||| |||||||||||| |||||||||||||||  ||||| |||||||    
T  14585674 agttaattctttaaccacgtcttttcacttgaatctctaaaatcccttttacattctttatttacttctgcattttactttagcatcttaaaatctta 14585577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 15999544 - 15999447
Alignment:
Q  25 agttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaatctta 122  Q
    ||||| ||| ||||||||   |||||||||||||| |||||     || ||||| |||||||||||| |||||||||||||||  ||||| |||||||    
T  15999544 agttaattccttaaccacgtcttttcacttgaatctctaaaaccccttttacattctttatttacttctgcattttactttagcatcttaaaatctta 15999447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 32402501 - 32402541
Alignment:
Q  74 tacatgctttatttacttttgcattttactttagtgtctta 114  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  32402501 tacatgttttatttacttatgcattttactttagtatctta 32402541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 522
Target Start/End: Complemental strand, 1035010 - 1034947
Alignment:
Q  456 aaaaacaaaaccaacacaacaatccactctctcttctctccaccgcccacaccctccgtcaccacca 522  Q
    ||||| ||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||    
T  1035010 aaaaagaaaaccaacacaacattc---tctctcttctctccaccgcccacaccctccgtcaccacca 1034947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 2915872 - 2915787
Alignment:
Q  21 accaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttag 107  Q
    ||||||||| ||||||||| |||||||||||||| |||| |||||||| ||| || ||| ||||||||||| | |||||||||||||    
T  2915872 accaagttaattctttaacgacactttttcacttcaatctctaaatttcttt-tatatgttttatttacttctacattttactttag 2915787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 40087959 - 40087892
Alignment:
Q  35 ttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttact 103  Q
    |||||||||||||||| |||||||| |||| ||  ||| |||||| ||||||||||| |||||||||||    
T  40087959 ttaaccacactttttcgcttgaatctctaa-ttcctttttacatgttttatttacttatgcattttact 40087892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 44343892 - 44343846
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaa 64  Q
    |||||||||||| ||| |||||||||||||||||||| |||| ||||    
T  44343892 tttaccaagttaattccttaaccacactttttcacttaaatctctaa 44343846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 25436993 - 25436909
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttact 103  Q
    |||||||||||| ||| | ||||||||||||||||||||||| || | ||  ||| |||||||||||||||||| |||||||||||    
T  25436993 tttaccaagttaattcctcaaccacactttttcacttgaatctct-atttcctttttacatgctttatttacttctgcattttact 25436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 29178960 - 29178862
Alignment:
Q  35 ttaaccacactttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtcttagaatcttaaaatattatctt 134  Q
    |||||||||  |||||||||||||| ||||||   ||| |||||| |||||||| || |||||||| |||||||||||||||| |  |||||||| ||||    
T  29178960 ttaaccacatattttcacttgaatctctaaatcctttt-tacatgttttatttaattctgcattttcctttagtgtcttagaacccaaaaatattgtctt 29178862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 25461985 - 25461900
Alignment:
Q  18 tttaccaagttagttctttaaccacacttttt-cacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttact 103  Q
    |||||||||||| ||| ||| | ||||||||| |||||||||| |||| | | ||| ||||||||||||||| || |||||||||||    
T  25461985 tttaccaagttaattccttagctacacttttttcacttgaatctctaattcttttt-tacatgctttatttatttctgcattttact 25461900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 544
Target Start/End: Original strand, 30129326 - 30129386
Alignment:
Q  486 ctcttctctccaccgcccacaccctccgtcac--caccaccgccgtcgacgtcgtcatcac 544  Q
    |||||||||||||||||||||||||||||| |  |||||| | ||||| ||||||||||||    
T  30129326 ctcttctctccaccgcccacaccctccgtcgccacaccactgtcgtcgccgtcgtcatcac 30129386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 39312045 - 39311999
Alignment:
Q  18 tttaccaagttagttctttaaccacactttttcacttgaatcgctaa 64  Q
    |||| ||||||| ||| ||||||||||||||||||||||||| ||||    
T  39312045 tttatcaagttaattccttaaccacactttttcacttgaatctctaa 39311999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 25291830 - 25291897
Alignment:
Q  46 ttttcacttgaatcgctaaatttgtttctacatgctttatttacttttgcattttactttagtgtctta 114  Q
    |||||||||||||| ||||| |  ||| |||||| |||||||||| |||||||||| |||||| |||||    
T  25291830 ttttcacttgaatctctaaa-tcctttttacatgttttatttactcttgcattttaatttagtatctta 25291897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University