View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_18 (Length: 549)
Name: NF11932_low_18
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 12739326 - 12739865
Alignment:
| Q |
16 |
aaaagcacacttctatgtaaagtcgtgtatcattcatccccttgagaatcacctatcagagcatctctaatcggatatgtttt-atctatagagatccaa |
114 |
Q |
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| T |
12739326 |
aaaaccacgcttctatgtaaagtcgtgtatcattcatccccttgagaatcacttctcagagcatctctaatcggatatgtttttatctatagagatccaa |
12739425 |
T |
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| Q |
115 |
c---ctattaaataacctcataaagaaaataaaggatagctaataataggcatcattgcatgcgcaaacacttgctctttatcctctctgaagcgcaggt |
211 |
Q |
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| T |
12739426 |
caacctattaaacaacctcataaagaaaataaaggatagctaacaataggcatcattgcatgcgcaaacacttgctctttatcctctctcaagcgcaggt |
12739525 |
T |
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| Q |
212 |
tttactattttgtcccttctaatgcaaagtttatgatatactccaaaactgtattatataggacttgagagcagatgtgcgcaagtgtgggggcatcact |
311 |
Q |
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| T |
12739526 |
tttactattatgtcccttctaatgcaaagtttatgatatactccaaaactgtattatataggacttgagagcatatgtgc--aagagtgggagcatcact |
12739623 |
T |
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| Q |
312 |
gacttctacgcgagattggagaggatggaggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcgaaggagtatgt |
411 |
Q |
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| T |
12739624 |
gacttctacgctagattggagaggatggtggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcgaaggagtatgt |
12739723 |
T |
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| Q |
412 |
gaggaaagaggatatacctagtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgacca----ttgataactttct |
507 |
Q |
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| T |
12739724 |
gaggaaagaggatatacctggtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgaccattttttgataactttct |
12739823 |
T |
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| Q |
508 |
atttcatacttgcatagtgtttatactttctctctctattgc |
549 |
Q |
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| T |
12739824 |
ctttcatacttgtataatgtttatactttctctctctattgc |
12739865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 12802149 - 12802688
Alignment:
| Q |
16 |
aaaagcacacttctatgtaaagtcgtgtatcattcatccccttgagaatcacctatcagagcatctctaatcggatatgtttt-atctatagagatccaa |
114 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12802149 |
aaaaccacgcttctatgtaaagccgtgtatcattcatccccttgagaatcacttctcagagcatctctaatcggatatgtttttatctatagagatccaa |
12802248 |
T |
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| Q |
115 |
c---ctattaaataacctcataaagaaaataaaggatagctaataataggcatcattgcatgcgcaaacacttgctctttatcctctctgaagcgcaggt |
211 |
Q |
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| T |
12802249 |
caacctattaaacaacctcataaagaaaataaaggatagctaacaataggcatcattgcatgcgcaaacacttgctctttatcctctctcaagcgcaggt |
12802348 |
T |
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| Q |
212 |
tttactattttgtcccttctaatgcaaagtttatgatatactccaaaactgtattatataggacttgagagcagatgtgcgcaagtgtgggggcatcact |
311 |
Q |
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| T |
12802349 |
tttactattatgtcccttctaatgcaaagtttatgatatactccaaaactgtattatataggacttgagagcatatgtgc--aagtgtgggagcatcact |
12802446 |
T |
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| Q |
312 |
gacttctacgcgagattggagaggatggaggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcgaaggagtatgt |
411 |
Q |
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| T |
12802447 |
gacttctacgctagactggagaggatggtggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcgaaggagtatgt |
12802546 |
T |
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| Q |
412 |
gaggaaagaggatatacctagtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgacca----ttgataactttct |
507 |
Q |
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| T |
12802547 |
gaggaaagaggatatacctggtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgaccattttttgataacttttt |
12802646 |
T |
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| Q |
508 |
atttcatacttgcatagtgtttatactttctctctctattgc |
549 |
Q |
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| T |
12802647 |
ctttcatacttgtatagtgtttatactttctctctctattgc |
12802688 |
T |
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Back To:
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