View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_19 (Length: 535)
Name: NF11932_low_19
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 52112984 - 52113493
Alignment:
| Q |
19 |
ctgtttttgcaagctctttttctagagtgttaaagaggtttgtgtaagatgagtggaactcagggataaagtggctactacgtgacttgaggaggaagaa |
118 |
Q |
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| T |
52112984 |
ctgtttttgcaagctctttttctagagtgttaaagaggtttgtgtaagatgagtgaaactcagggataaagtggctactacgtgacttgaggaggaagaa |
52113083 |
T |
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| Q |
119 |
aagaaggcgtttgagttggtcgtgttttggttcggttggatcaaggtaagagaggatacggtaaccaccagtgagttctgttgacggcatgaaagttccg |
218 |
Q |
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| T |
52113084 |
aagaaggcgtttgagttggtcgtgttttggttcggttggatcaaggtaagagaggatacggtaaccaccagtgagttctgttgacggcatgaaagttccg |
52113183 |
T |
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| Q |
219 |
gtgaagaggtcacgtttttcaactttggaattgtcgaagagaacagggaatgattttccgtcaagtaaaacaatgacgtttgggtttgaggaaatgaatg |
318 |
Q |
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| T |
52113184 |
gtgaagaggtcacgtttttcaactttggaattgtcgaagagaacagggaatgattttccgtcaagtaaaacaatgacgtttgggttagaggaaatgaatg |
52113283 |
T |
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| Q |
319 |
ggcctggtggcatattagcgcgaaaaatggttgatttgtatttgtgcattttacttctgaaatatttgtcgcggccgccttcgttgtagaaatattcaag |
418 |
Q |
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| T |
52113284 |
ggcctggtggcatattagcgcgaaaaatggttgatttgtatttgtgcattttgcttctgaaatatttgtcgcggccgccttcgttgtagaaatattcaag |
52113383 |
T |
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| Q |
419 |
acggtctttgataggacctacgaatgggaggccgtaatctccagggattcttcgcattgaaagttttttgggtggttcgggtgaaactaatgacgatgtt |
518 |
Q |
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| T |
52113384 |
acggtctttgataggacctacgaatgggaggccgtaatctccagggattcttcgcattggaagttttttgggtggttcgggtgaaactaatgacgatgtt |
52113483 |
T |
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| Q |
519 |
gtgtctgtgc |
528 |
Q |
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| T |
52113484 |
gtgtctgtgc |
52113493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 12505235 - 12505202
Alignment:
| Q |
298 |
ttgggtttgaggaaatgaatgggcctggtggcat |
331 |
Q |
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| T |
12505235 |
ttgggtttgaggaaatgaatggacctggtggcat |
12505202 |
T |
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