View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_20 (Length: 525)
Name: NF11932_low_20
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 21242459 - 21241955
Alignment:
| Q |
1 |
attgcgccgatggaggcagcagctaggaaacatacagggaattcgatgttattaggggagaggatgaggacgacgtcgtttttgtttatgccaaagttta |
100 |
Q |
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| T |
21242459 |
attgcgccgatggaggcagcagctaggaaacatacagggaattcgatgttattgggggagaggatgaggacgacgtcgtttttgtttatgccaaagttta |
21242360 |
T |
|
| Q |
101 |
gtaaactgtgtgcaagttttgcaacttgtgttttgagttgagagaaggagaatgttcgggaagagtctgcgtcgatgagggcggttttgttaggggaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242359 |
gtaaactgtgtgcaagttttgcaacttgtgttttgagttgagagaaggagagtgtttgggaagagtctgcgtcgatgagggcggttttgttaggggaaga |
21242260 |
T |
|
| Q |
201 |
ggagacacttgtgaagaggaatgagactaaggaaaggtttggattgtttgggagggctagagaaggtcttagggacctgtatattccatctggaccataa |
300 |
Q |
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| T |
21242259 |
ggagacacttgtgaagaggaatgagactaaggaaaggtttggattgtttgggagggctagagaaggtcttagggacctgtaaattccatctggaccataa |
21242160 |
T |
|
| Q |
301 |
cctgatctctgcattgaaagagatgataaaatagtatatagatatgattttgaatacgaggagtatttaaaactagaataaaatgaaataatggatatgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242159 |
cctgatctctgcattgaaagagatgataaaatagtatatagatatgattttgaatatgaggagtatttaaaactagaataaaatgaaataatggatatgg |
21242060 |
T |
|
| Q |
401 |
tgatgaaatttatagttgattggttttgattttggattatgatttcacaaggtgaattaatgagtgatgtgttttatgactctgaatggttattacatca |
500 |
Q |
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| T |
21242059 |
tgatgaaatttatagttgattggttttgattttggattatgatttcacaaggtgaattaatgagtgatg-gttttatgactctgaatggttattacatca |
21241961 |
T |
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| Q |
501 |
agtttg |
506 |
Q |
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|||||| |
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| T |
21241960 |
agtttg |
21241955 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 40810140 - 40810194
Alignment:
| Q |
262 |
gaaggtcttagggacctgtatattccatctggaccataacctgatctctgcattg |
316 |
Q |
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|||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
40810140 |
gaaggtcttaaggacctgtatattccatctgaaccgtaacctgatttctgcattg |
40810194 |
T |
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