View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_23 (Length: 484)
Name: NF11932_low_23
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_23 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 26747299 - 26747653
Alignment:
| Q |
19 |
ctatttccttgagaaaatatgtcccgggtcattttctttactgctatttccttggggaaataatatttttggggtcgttttccctgctatttcctttgca |
118 |
Q |
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| T |
26747299 |
ctatttcgttgagaaaatatgtcccgggtcattttctttactgctattttctttgggaaataatatttttggggtcgttttccctgctatttcatttgca |
26747398 |
T |
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| Q |
119 |
cttttcttcttgctttaatggttggtatctcggttaatattttcaaacatacaaattctttgtagtttgtccttgtccaaagtgcatttaacttttaaat |
218 |
Q |
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| T |
26747399 |
cttttcttcttactttaatggttggtatctcggataatattttcaaacatacaaattctttgtagttggtcc------aaagtgcatttaatttttaaat |
26747492 |
T |
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| Q |
219 |
tgttggatcttgacggtgcgtagctgcgatattaatagcaagattctaaagtgcaacaattaagaattgagatactgtaaaaaagaatagatattgtatg |
318 |
Q |
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| T |
26747493 |
tgttggatcttgacggtgcgtagctgcgata---atagcaagattctaaagtgcaacaattaagaattgagatactgtaaaaaagaatagagattgtatg |
26747589 |
T |
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| Q |
319 |
tccgagaaaatcttatctttgactgtaatataatttgagcattaaattaatagggtttttctaa |
382 |
Q |
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| T |
26747590 |
tccgagaaaatcttatctttgactgtaatataatttgagcattaaattaatagggtttttctaa |
26747653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 26725327 - 26725431
Alignment:
| Q |
19 |
ctatttccttgagaaaatatgtcccgggtcattttctttactgctatttccttggggaaataatatttttggggtcgttttccctgctatttcctttgca |
118 |
Q |
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| T |
26725327 |
ctatttccttgagaaaatatgtcgagggtcattttctct-ctgctatttccttggggagataaaaaatttagggtcattttccctgttatttcctttgca |
26725425 |
T |
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| Q |
119 |
cttttc |
124 |
Q |
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|||||| |
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| T |
26725426 |
cttttc |
26725431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 26725462 - 26725514
Alignment:
| Q |
193 |
gtccaaagtgcatttaacttttaaattgttggatcttgacggtgcgtagctgc |
245 |
Q |
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| T |
26725462 |
gtccaaagtgcgatttacttttaaattgttcgatcttgacggtgcgtagctgc |
26725514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 183873 - 183932
Alignment:
| Q |
60 |
tgctatttcctt-ggggaaataatat--ttttggggtcgttttccctgctatttcctttg |
116 |
Q |
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| T |
183873 |
tgctatttcctttggggaaaaaatatatttttgggatcattttccctgctatttcctttg |
183932 |
T |
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