View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_28 (Length: 452)

Name: NF11932_low_28
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_28
NF11932_low_28
[»] chr5 (3 HSPs)
chr5 (17-436)||(29595781-29596191)
chr5 (361-406)||(12187254-12187299)
chr5 (362-405)||(22294056-22294099)
[»] chr2 (2 HSPs)
chr2 (362-406)||(40574141-40574185)
chr2 (362-406)||(1004773-1004817)
[»] chr7 (1 HSPs)
chr7 (363-406)||(16861748-16861791)
[»] chr3 (4 HSPs)
chr3 (362-405)||(44698290-44698333)
chr3 (362-406)||(4020169-4020213)
chr3 (362-406)||(6785792-6785836)
chr3 (362-406)||(44291228-44291272)
[»] chr6 (1 HSPs)
chr6 (362-408)||(21809804-21809850)
[»] chr4 (1 HSPs)
chr4 (365-407)||(16004448-16004490)
[»] scaffold0068 (1 HSPs)
scaffold0068 (363-408)||(52081-52126)
[»] chr8 (3 HSPs)
chr8 (361-405)||(20542459-20542503)
chr8 (362-406)||(41726967-41727011)
chr8 (362-406)||(44648936-44648980)
[»] chr1 (2 HSPs)
chr1 (364-408)||(19066929-19066973)
chr1 (364-408)||(19114819-19114863)


Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 29596191 - 29595781
Alignment:
Q  17 cataccttttgtttcttttctgcattttaaaactgaaactcataaaagccacaaccaagtgagatcaacatccattttaatatccttccgtaaagaactc 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29596191 cataccttttgtttcttttctg-attttaaaactgaaactcataaaagccacaaccaagtgagatcaacatccattttaatatccttccgtaaagaactc 29596093  T
Q  117 aacttaatagtaagtcacatgctaagaaagacacgaccgtggagattgttgcgacaattttctaaacccataaaatacacttcttacgaaatatttatgc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29596092 aacttaatagtaagtcacatgctaagaaagacacgaccgtggagattgttgcgacaattttctaaacccataaaatacacttcttatgaaatatttatgc 29595993  T
Q  217 tcacagaatcacccttaagtccttaacacacaattttgagagatgactcaattgcacatcatagaaaccaataagcgcatcagcaaacgatagaggcttg 316  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595992 tcacagaatcaccc--------ttaacacacaattttgagagatgactcaattgcacatcatagaaaccaataagcgcatcagcaaacgatagaggcttg 29595901  T
Q  317 ccaatattcttagttggtgtttcattaagtgtgttctagggacgttggttaagaaatctacaaatagaatttttgtcatggaaatataaattagaagaag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29595900 ccaatattcttagttggtgtttcattaagtgtgttctagggacgttggttaagaaatctacaaatagaatttttgtcatggaaatataaattagaagaag 29595801  T
Q  417 agaataatgacggagaatct 436  Q
    ||||||||||||||||||||    
T  29595800 agaataatgacggagaatct 29595781  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 12187299 - 12187254
Alignment:
Q  361 ttggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||    
T  12187299 ttggttaaagaatctacaaatagaatttttgtcttggaaatataaa 12187254  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 22294099 - 22294056
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataa 405  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  22294099 tggttaaggaatctacaaatagaaattttgtcttggaaatataa 22294056  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 40574141 - 40574185
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||    
T  40574141 tggttaaggaatctacaaatagaaattttgtcttggaaatataaa 40574185  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 1004773 - 1004817
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  1004773 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 1004817  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 16861791 - 16861748
Alignment:
Q  363 ggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||    
T  16861791 ggttaagaaatctataaatagaatttatgtcttggaaatataaa 16861748  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 44698333 - 44698290
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataa 405  Q
    |||||||||||||||||||||||| ||||||| || ||||||||    
T  44698333 tggttaagaaatctacaaatagaaattttgtcttgaaaatataa 44698290  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 4020213 - 4020169
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 4020169  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 6785792 - 6785836
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| | ||||||||||||||||||||| || |||||||||    
T  6785792 tggttaaggattctacaaatagaatttttgtcttgaaaatataaa 6785836  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 44291228 - 44291272
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| |||||| ||||||||||| |||| ||||||||||||    
T  44291228 tggttaaggaatctataaatagaatttctgtcttggaaatataaa 44291272  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 21809804 - 21809850
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaatt 408  Q
    ||||||||||||||| |||||||||| ||||| | ||||||||||||    
T  21809804 tggttaagaaatctataaatagaattgttgtcttagaaatataaatt 21809850  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 16004490 - 16004448
Alignment:
Q  365 ttaagaaatctacaaatagaatttttgtcatggaaatataaat 407  Q
    |||||||||||| ||||||||||| |||| |||||||||||||    
T  16004490 ttaagaaatctataaatagaatttctgtcttggaaatataaat 16004448  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 52126 - 52081
Alignment:
Q  363 ggttaagaaatctacaaatagaatttttgtcatggaaatataaatt 408  Q
    |||||||||||||| |||||||||| ||||| | ||||||||||||    
T  52126 ggttaagaaatctataaatagaattgttgtcttagaaatataaatt 52081  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 20542503 - 20542459
Alignment:
Q  361 ttggttaagaaatctacaaatagaatttttgtcatggaaatataa 405  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  20542503 ttggttaaggaatctacaaatagaaatttcgtcttggaaatataa 20542459  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 41727011 - 41726967
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| |||||||||||| || ||||||| ||||||||||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaa 41726967  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 44648936 - 44648980
Alignment:
Q  362 tggttaagaaatctacaaatagaatttttgtcatggaaatataaa 406  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  44648936 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaa 44648980  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 19066973 - 19066929
Alignment:
Q  364 gttaagaaatctacaaatagaatttttgtcatggaaatataaatt 408  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||    
T  19066973 gttaagaaatctataaatagaattgttgtcttagaaatataaatt 19066929  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 19114863 - 19114819
Alignment:
Q  364 gttaagaaatctacaaatagaatttttgtcatggaaatataaatt 408  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||    
T  19114863 gttaagaaatctataaatagaattgttgtcttagaaatataaatt 19114819  T

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