View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_3 (Length: 793)
Name: NF11932_low_3
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_3 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 702; Significance: 0; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 11 - 780
Target Start/End: Complemental strand, 19562 - 18793
Alignment:
| Q |
11 |
cataggtgtgttgttacttttcttggtttatccgaaattcaaaataagaatggagtttcaagaagatacatatccaaggattgaagatcaaattcaacac |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19562 |
cataggtgtgttgttacttttcttggtttatcggaaattccaaagaagaatggaggttcaagaagatacatatccaaggattgaggatcaaattcaacac |
19463 |
T |
|
| Q |
111 |
tcatctatggctccaaagaaatatcgactaaaggaattgatgaatgcaactggtggattcagccatcagaacaagcttggtgagggtggatttggaactg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19462 |
tcatctatggctccaaagaaatatcgactaaaggaattgatgaatgcaacaggtggattcagccatcagaacaagcttggtgagggtggatttggaaccg |
19363 |
T |
|
| Q |
211 |
tttataagggaatccttggaaaaatcaataaagagatagctgtgaagagagtctcaaagaattcgcgtcaaggaaagaaagaatttatcgccgaagttac |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19362 |
tttataagggaatccttggaaaaatcaataaagagatagctgtgaagagagtctcaaagaattcgcgtcaaggaaagaaagaatttatcgccgaagttac |
19263 |
T |
|
| Q |
311 |
aacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgctatgaaagtaaagagcttctccttgtttatgagttcatgccaaatgga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19262 |
aacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgctatgaaagtaaagagcttctccttgtttatgagttcatgccaaatgga |
19163 |
T |
|
| Q |
411 |
agtttagacaaatacctatttaaaaattcgagtgaactcgaatcacattattcgaaagtacttgattggaaaactaggaatggtgtgattcgtgacgtgg |
510 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19162 |
agtttagacaaatacctatttaaccaatcgagtgaactcgaatcacattattcgaaagtacttgattggaaaactaggaatggtgtgattcgtgacgtgg |
19063 |
T |
|
| Q |
511 |
cacaagcattggattatcttcacaatggttgtgaaaaaagggtacttcatagagacattaaaacaagcaacataatgctggatttcaattacgttgcaaa |
610 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19062 |
cgcaagcattggattatcttcacaatggttgtgaaaaaaggttacttcatagagacattaaaacaagcaacataatgctggattttgattacgttgcaaa |
18963 |
T |
|
| Q |
611 |
attgggtgattttggattggcgcgaatagttcaaatgagaaatgaaactcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaa |
710 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18962 |
attgggtgattttggattggcacgaatagttcaaatgagaaaagaaactcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaa |
18863 |
T |
|
| Q |
711 |
atatttttaaccggaagagcgacggttgaaacagatgtttatgcatttggtgtacttgttttggaagttg |
780 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18862 |
atatttttaaccggaagagcgacggttgaaacagatatttatgcatttggtgtacttgttttggaagttg |
18793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 11 - 780
Target Start/End: Original strand, 36861 - 37630
Alignment:
| Q |
11 |
cataggtgtgttgttacttttcttggtttatccgaaattcaaaataagaatggagtttcaagaagatacatatccaaggattgaagatcaaattcaacac |
110 |
Q |
| |
|
||||||||||||| || |||||||||| |||| ||| | |||| ||| |||||| ||||||||||||||||||||||||| || ||||||||||| || |
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| T |
36861 |
cataggtgtgttggtatttttcttggtatatcggaacgtgaaaagaagcatggagattcaagaagatacatatccaaggatagaggatcaaattcagtac |
36960 |
T |
|
| Q |
111 |
tcatctatggctccaaagaaatatcgactaaaggaattgatgaatgcaactggtggattcagccatcagaacaagcttggtgagggtggatttggaactg |
210 |
Q |
| |
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|| || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
36961 |
tcgtcaatggcaccaaagaaatatcgactaaaggaattgatgaaagcaacaggtggattcagccatcagaacaagcttggtgaagggggatttggaactg |
37060 |
T |
|
| Q |
211 |
tttataagggaatccttggaaaaatcaataaagagatagctgtgaagagagtctcaaagaattcgcgtcaaggaaagaaagaatttatcgccgaagttac |
310 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
37061 |
tttataagggattccttggaaaaaacaataaagagatagctgtgaagagagtctcgaagaattcacgtcaaggaaagaaagaatttatagccgaagttac |
37160 |
T |
|
| Q |
311 |
aacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgctatgaaagtaaagagcttctccttgtttatgagttcatgccaaatgga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37161 |
aacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgctatgaaaataaagagcttctccttgtttatgagttcatgccaaatgga |
37260 |
T |
|
| Q |
411 |
agtttagacaaatacctatttaaaaattcgagtgaactcgaatcacattattcgaaagtacttgattggaaaactaggaatggtgtgattcgtgacgtgg |
510 |
Q |
| |
|
|| |||||||||||||||||||| || | || ||| | || | ||||| ||| |||||||||| ||||||||| || ||| |||||||| ||||||||| |
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|
| T |
37261 |
agcttagacaaatacctatttaataaaacaagggaattagagttacatttttcaaaagtacttgcttggaaaacaagaaatagtgtgattggtgacgtgg |
37360 |
T |
|
| Q |
511 |
cacaagcattggattatcttcacaatggttgtgaaaaaagggtacttcatagagacattaaaacaagcaacataatgctggatttcaattacgttgcaaa |
610 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||| |
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| T |
37361 |
cgcaagcattggattatcttcacaatggttgtgaaaaaagggtacttcatagagacattaaagcaagcaacataatgttagattttgattacgttgcaaa |
37460 |
T |
|
| Q |
611 |
attgggtgattttggattggcgcgaatagttcaaatgagaaatgaaactcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaa |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37461 |
attgggtgattttggattggcgcgaatagtacaaatgagaaatgaaactcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaa |
37560 |
T |
|
| Q |
711 |
atatttttaaccggaagagcgacggttgaaacagatgtttatgcatttggtgtacttgttttggaagttg |
780 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561 |
atatttttaaccggaagagcgacggttgaaacagatgtttatgcatttggtgtacttgttttggaagttg |
37630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 67 - 779
Target Start/End: Original strand, 11233 - 11942
Alignment:
| Q |
67 |
ttcaagaagatacatatccaaggattgaagatcaaattcaacactcatctatggctccaaagaaatatcgactaaaggaattgatgaatgcaactggtgg |
166 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||| | || ||||| ||| |
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|
| T |
11233 |
ttcaagaagatgcatatccaaggatagaggatcaaattcaacactcgtctatggctccaaagaaatatcagttaaaggaattggtcaaagcaacaaatgg |
11332 |
T |
|
| Q |
167 |
attcagccatcagaacaagcttggtgagggtggatttggaactgtttataagggaatccttggaaaaatcaataaagagatagctgtgaagagagtctca |
266 |
Q |
| |
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|||||||||||||||||| || || | ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11333 |
attcagccatcagaacaaactcggccaaggtggatttggaactgtctataaaggaatccttggaaa---caataaagagatagctgtgaagagagtctcg |
11429 |
T |
|
| Q |
267 |
aagaattcgcgtcaaggaaagaaagaatttatcgccgaagttacaacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgctatg |
366 |
Q |
| |
|
||| |||| || ||||||||| |||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11430 |
aaggattctcgacaaggaaagcaagagtttatagcagaagttacaacaattggtagccttcaccacaaaaacttggtgaaactcattggttggtgctatg |
11529 |
T |
|
| Q |
367 |
aaagtaaagagcttctccttgtttatgagttcatgccaaatggaagtttagacaaatacctatttaaaaattcgagtgaactcgaatcacattattcgaa |
466 |
Q |
| |
|
| | ||||| |||||| ||||||| ||||||||||| |||||||| ||||| || ||||| ||||| | ||||| |||||||||| |||||||||||| |
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|
| T |
11530 |
agaaaaaagaacttctcattgtttacgagttcatgcctaatggaagcttagataagtacctgtttaaccaatcgagggaactcgaattacattattcgaa |
11629 |
T |
|
| Q |
467 |
agtacttgattggaaaactaggaatggtgtgattcgtgacgtggcacaagcattggattatcttcacaatggttgtgaaaaaagggtacttcatagagac |
566 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
11630 |
agtacttgattggaaaactaggaatggcgtgatccgtgatgtggctcaagcattggattatcttcatgatggttgtgaaaaaaaggtacttcatagagac |
11729 |
T |
|
| Q |
567 |
attaaaacaagcaacataatgctggatttcaattacgttgcaaaattgggtgattttggattggcgcgaatagttcaaatgagaaatgaaactcatcatt |
666 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||| | | |||||| |||||||||||||||||||| |
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|
| T |
11730 |
attaaagcaagcaacataatgttggattttgattacgttgcgaaattaggtgattttggattggcgcgtacaattcaaaagagaaatgaaactcatcatt |
11829 |
T |
|
| Q |
667 |
caacaaaggaaattgcaggaacaccgggctatatggcaccggaaatatttttaaccggaagagcgacggttgaaacagatgtttatgcatttggtgtact |
766 |
Q |
| |
|
| |||||||||||||| |||||||| || ||||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
11830 |
cgacaaaggaaattgctggaacaccaggttatatggcaccagaaacttttttaaccggaagagcaacggtcgaaacagatgtgtatgcatttggtgtact |
11929 |
T |
|
| Q |
767 |
tgttttggaagtt |
779 |
Q |
| |
|
||||||||||||| |
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| T |
11930 |
tgttttggaagtt |
11942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 36939134 - 36939203
Alignment:
| Q |
351 |
attggttggtgctatgaaagtaaagagcttctccttgtttatgagttcatgccaaatggaagtttagaca |
420 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| | ||||| ||||||| |||||||||||| |||||||||| |
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|
| T |
36939134 |
attggttggtgtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagaca |
36939203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 47689565 - 47689598
Alignment:
| Q |
186 |
cttggtgagggtggatttggaactgtttataagg |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
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| T |
47689565 |
cttggtgagggtggttttggaactgtttataagg |
47689598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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