View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_31 (Length: 446)

Name: NF11932_low_31
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_31
NF11932_low_31
[»] chr3 (19 HSPs)
chr3 (1-230)||(26757659-26757892)
chr3 (276-431)||(26757458-26757613)
chr3 (6-230)||(44471083-44471309)
chr3 (7-166)||(23659514-23659677)
chr3 (1-230)||(44681887-44682118)
chr3 (7-230)||(779392-779618)
chr3 (1-167)||(33231399-33231567)
chr3 (1-198)||(28550541-28550740)
chr3 (1-119)||(46892763-46892883)
chr3 (15-197)||(26918347-26918529)
chr3 (4-198)||(54246530-54246730)
chr3 (44-230)||(27524083-27524269)
chr3 (1-230)||(30554428-30554659)
chr3 (2-230)||(11503210-11503446)
chr3 (1-224)||(44285632-44285840)
chr3 (9-120)||(35847299-35847414)
chr3 (1-153)||(47831165-47831316)
chr3 (79-166)||(13870329-13870415)
chr3 (79-198)||(22240605-22240724)
[»] chr7 (22 HSPs)
chr7 (1-229)||(48070681-48070911)
chr7 (30-197)||(44523590-44523758)
chr7 (1-204)||(12471623-12471828)
chr7 (6-230)||(25545101-25545327)
chr7 (6-197)||(31136239-31136431)
chr7 (6-217)||(12470903-12471116)
chr7 (1-197)||(12470114-12470310)
chr7 (10-170)||(35738033-35738193)
chr7 (4-228)||(3996837-3997060)
chr7 (6-153)||(12012835-12012983)
chr7 (1-75)||(49124439-49124513)
chr7 (45-198)||(27226846-27226991)
chr7 (1-72)||(2501940-2502011)
chr7 (12-75)||(32971453-32971516)
chr7 (6-64)||(2923122-2923180)
chr7 (7-51)||(48638221-48638265)
chr7 (1-75)||(46993471-46993545)
chr7 (7-193)||(2197566-2197753)
chr7 (126-230)||(22331993-22332097)
chr7 (20-97)||(46265213-46265290)
chr7 (137-229)||(7352396-7352488)
chr7 (71-175)||(45595452-45595556)
[»] chr4 (10 HSPs)
chr4 (1-230)||(53393044-53393275)
chr4 (1-225)||(42141319-42141536)
chr4 (6-194)||(8606028-8606216)
chr4 (67-207)||(8056801-8056940)
chr4 (1-96)||(24466204-24466301)
chr4 (12-119)||(19681969-19682078)
chr4 (5-96)||(23107800-23107893)
chr4 (7-95)||(13207284-13207375)
chr4 (42-121)||(39838953-39839034)
chr4 (137-229)||(23107938-23108030)
[»] chr2 (19 HSPs)
chr2 (1-230)||(5526283-5526513)
chr2 (17-230)||(27866677-27866889)
chr2 (6-229)||(29109056-29109281)
chr2 (1-192)||(37630434-37630625)
chr2 (8-179)||(30906736-30906926)
chr2 (6-197)||(44018837-44019029)
chr2 (6-153)||(30340514-30340661)
chr2 (1-202)||(3689996-3690184)
chr2 (1-197)||(33036926-33037116)
chr2 (1-73)||(10722020-10722094)
chr2 (73-198)||(4240757-4240883)
chr2 (1-75)||(22848096-22848170)
chr2 (100-217)||(3919845-3919962)
chr2 (1-73)||(28199803-28199875)
chr2 (1-204)||(38607058-38607266)
chr2 (129-230)||(35954764-35954865)
chr2 (24-75)||(4240915-4240965)
chr2 (113-208)||(7772064-7772159)
chr2 (137-229)||(31111480-31111572)
[»] chr6 (16 HSPs)
chr6 (7-230)||(11846306-11846531)
chr6 (1-230)||(9826802-9827034)
chr6 (9-225)||(23300496-23300706)
chr6 (1-230)||(2453998-2454229)
chr6 (10-230)||(23585919-23586143)
chr6 (7-170)||(11971536-11971701)
chr6 (2-230)||(7176377-7176599)
chr6 (1-75)||(1208781-1208855)
chr6 (44-230)||(32613784-32613966)
chr6 (135-225)||(23301482-23301572)
chr6 (6-170)||(7551292-7551454)
chr6 (7-75)||(20722497-20722565)
chr6 (1-53)||(26880016-26880068)
chr6 (1-40)||(5416283-5416322)
chr6 (21-120)||(12263165-12263264)
chr6 (1-35)||(26186595-26186629)
[»] chr8 (12 HSPs)
chr8 (7-229)||(16570757-16570981)
chr8 (6-230)||(3767551-3767776)
chr8 (1-230)||(32321865-32322097)
chr8 (1-198)||(9505114-9505327)
chr8 (6-197)||(9040511-9040704)
chr8 (7-230)||(25456027-25456252)
chr8 (1-74)||(20860269-20860342)
chr8 (1-65)||(3555307-3555370)
chr8 (1-170)||(25808174-25808345)
chr8 (9-166)||(37379932-37380089)
chr8 (137-198)||(34760833-34760894)
chr8 (1-75)||(25344001-25344075)
[»] chr5 (6 HSPs)
chr5 (1-217)||(7239168-7239386)
chr5 (1-217)||(7244344-7244562)
chr5 (1-229)||(1498083-1498313)
chr5 (1-230)||(17770278-17770509)
chr5 (1-170)||(39786074-39786247)
chr5 (1-96)||(31896083-31896180)
[»] chr1 (8 HSPs)
chr1 (1-230)||(11911651-11911883)
chr1 (1-217)||(17530683-17530904)
chr1 (1-170)||(32678346-32678516)
chr1 (113-230)||(8414581-8414698)
chr1 (6-125)||(4919574-4919693)
chr1 (13-83)||(27320383-27320453)
chr1 (117-230)||(513019-513132)
chr1 (137-229)||(25785818-25785910)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-230)||(8233-8463)
[»] scaffold0564 (2 HSPs)
scaffold0564 (1-110)||(6489-6599)
scaffold0564 (139-217)||(6394-6472)
[»] scaffold0002 (1 HSPs)
scaffold0002 (7-110)||(344244-344349)
[»] scaffold0879 (1 HSPs)
scaffold0879 (1-96)||(469-566)
[»] scaffold0070 (2 HSPs)
scaffold0070 (7-230)||(13812-14037)
scaffold0070 (1-75)||(33946-34020)
[»] scaffold1335 (1 HSPs)
scaffold1335 (9-120)||(849-964)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-96)||(1736-1830)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26757892 - 26757659
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg----gaaggataatattattaaaat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| ||||||    
T  26757892 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtgtgtggaaggataatattactaaaat 26757793  T
Q  97 ggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26757792 ggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggt 26757693  T
Q  197 tcagttttaaactaaaccaaataaggtcggatac 230  Q
    ||||||||||||||||||||| || |||| ||||    
T  26757692 tcagttttaaactaaaccaaacaacgtcgaatac 26757659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 276 - 431
Target Start/End: Complemental strand, 26757613 - 26757458
Alignment:
Q  276 tccaaaccacttacacccctaatctcaggttcttatttcatttttggtatgttgtatacacatgaataatttttgtttgatgtgatagtgtacacaatcc 375  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26757613 tccaaaccacttacacccctaatctcagattcttatttcatttttggtatgttgtatacacatgaataatttttgtttgatgtgatagtgtacacaatcc 26757514  T
Q  376 caacaaacataaatatttggcacaaagccaatcaaacaagtctcaaagcataaagt 431  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26757513 caacaaacataaatatttggcacgaagccaatcaaacaagtctcaaagcataaagt 26757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 44471309 - 44471083
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagt 103  Q
    |||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| ||  || ||||||||||| |||| ||| ||||    
T  44471309 gagaaagtgaatgaattatggagtattttatgttagcctttaattttgagcttaatcataagtgtgtttgaggagggataatattactaaactggggagt 44471210  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
     | ||||  |||||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||| ||| |||| ||||| |||||| ||||| ||||    
T  44471209 tatgttagcatcggttcggttcatcggttctttggatttcaaaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttt 44471110  T
Q  204 taaactaaaccaaataaggtcggatac 230  Q
    | |||  ||| ||| ||||||||||||    
T  44471109 tgaaccgaactaaacaaggtcggatac 44471083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 23659677 - 23659514
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt----ggaaggataatattattaaaatggagag 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    ||| ||||||||||| ||||||||||||    
T  23659677 agaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattataagtgtgtgtgtgaggagggataatattactaaaatggagag 23659578  T
Q  103 tgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaa 166  Q
    ||| ||||  |||||||| ||| | || ||| ||||||||||||||||||| ||||||||||||    
T  23659577 tgatgttagcatcggttcggttcaccggttcattggatctcaaaattaaaaaccaagaaccgaa 23659514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44681887 - 44682118
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaa-ggataatattattaaaatgg 98  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |  |||||    
T  44681887 gatgggagaaagtaaatgaattaaggagtattttatgttggactttaattttgagcttaatcataagtgtgtgtgagaacggataatattact-caatgg 44681985  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttagg-ttggttcggtt 197  Q
      ||||||||||  |||||||| |||| ||| ||| | |||| |||||||||||| ||||||||| |||||| ||| |||| |||||| ||||||| |||    
T  44681986 gaagtgaggttagcatcggttcggtttgtcggttcatcggatttcaaaattaaaaaccaagaaccaaaccaaactagatcggtttaggtttggttcagtt 44682085  T
Q  198 cagttttaaactaaaccaaataaggtcggatac 230  Q
    | ||||| | |  ||||||| ||||||| ||||    
T  44682086 cggttttgatccgaaccaaacaaggtcgtatac 44682118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 779392 - 779618
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtg--tgtgtggaaggataatattattaaaatggagagtg 104  Q
    ||||||||| ||||||| | ||||||||||||||  ||||||||||||| |||||||||||||  |||| |||  |||| |||||  |||||||||||||    
T  779392 agaaagtgagtgaattatgaagtattttatgttggcctttaattttgagtttaatcataagtgtatgtgaggagtgatagtattacaaaaatggagagtg 779491  T
Q  105 aggttactatcggttcagtttatcgattctttggatctc-aaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
    || |||  |||||||| ||| |||| |||||||||| || |||||||||| |||||||||||||||| ||| || | |||||||||||||| ||| ||||    
T  779492 agattagcatcggttcggttcatcggttctttggatttcaaaaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttt 779591  T
Q  204 taaactaaaccaaataaggtcggatac 230  Q
    | |||  ||| ||| ||||| ||||||    
T  779592 tgaaccgaactaaacaaggttggatac 779618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 33231399 - 33231567
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtg--tgtgtggaaggataatattattaaaatgg 98  Q
    |||| |||||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||||  | || ||| | ||||||||| ||||||||    
T  33231399 gatgtgagaaagtgaatgaattgtggagtattttatgctgacctttaattttgagcttaatcataagtgtatatgaggaggtataatattactaaaatgg 33231498  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaac 167  Q
     |||||||||||  |||||||| ||| |||| ||||| | || |||||||||||| |||||||||||||    
T  33231499 ggagtgaggttagcatcggttcggttcatcggttcttcgaatttcaaaattaaaaaccaagaaccgaac 33231567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 28550740 - 28550541
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatgg 98  Q
    |||| ||||||||||||||||| || ||||||||| |||| |||||||||||||| ||||||||||||||||||  |||  |||||||||   ||||| |    
T  28550740 gatgggagaaagtgaatgaattgagaagtattttacgttggactttaattttgagtttaatcataagtgtgtgtgaggagagataatattgccaaaatag 28550641  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     |||||||||||  |||| ||| ||| |||| |||||| |||||||||||||||| || |||| |||||||| ||| |||  |||| |||||||||||||    
T  28550640 ggagtgaggttaacatcgattcggttcatcggttctttagatctcaaaattaaaaaccgagaatcgaaccaaactagatccgtttaagttggttcggttc 28550541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 46892883 - 46892763
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||  || ||||||||||| |||||||     
T  46892883 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagatcaatcgtaagtgtgtgtgatgagggataatattactaaaatga 46892784  T
Q  99 agagtgaggttactatcggtt 119  Q
     |||||||||||  |||||||    
T  46892783 ggagtgaggttagcatcggtt 46892763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 26918347 - 26918529
Alignment:
Q  15 aatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggttactat 114  Q
    |||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||| | ||||  |||||  ||    
T  26918347 aatgaattaaggagcatattatgctggactttaattttgagcttaattataagtgtgtgaggagggataatattactaaaatagggagtagggttagcat 26918446  T
Q  115 cggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    | ||||  || ||||  |||||| |||||||||||||||    ||||| ||||||| ||| ||| ||||||||||||||||||    
T  26918447 cagttcgattcatcggctctttgaatctcaaaattaaaaattgagaactgaaccaaactagatcaatttaggttggttcggtt 26918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 54246730 - 54246530
Alignment:
Q  4 gagagaaagtgaatgaattaa---ggagtattttatgttgaactttaattttgagcttaatcataagtgt---gtgtggaaggataatattattaaaatg 97  Q
    ||||||||||||||| |||||   |||||||||||||||| ||||||||||||||||||| ||||  |||   ||| |||  ||| |||||| |||||||    
T  54246730 gagagaaagtgaatgtattaataaggagtattttatgttggactttaattttgagcttaagcatagatgttttgtgaggagcgatgatattaataaaatg 54246631  T
Q  98 gagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    | |||||| ||||  |||||||  |||  ||| |||||||||||||||||||||||    ||||||||||||| |  ||||| ||| |||||||||||||    
T  54246630 gggagtgaagttagcatcggtttggttcgtcggttctttggatctcaaaattaaaaattgagaaccgaaccaaacattatcggtttgggttggttcggtt 54246531  T
Q  198 c 198  Q
    |    
T  54246530 c 54246530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 27524269 - 27524083
Alignment:
Q  44 tttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctc 143  Q
    ||||| |||| || |||||||||||||||| |||  ||||||| || |||||||| ||||| |||||| || ||||| ||| |||||||| ||||||||     
T  27524269 tttaactttgggcctaatcataagtgtgtgaggagagataataatagtaaaatggggagtggggttaccattggttcggttcatcgattccttggatctg 27524170  T
Q  144 aaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggatac 230  Q
    |||||||||| |  ||||||||||||| | |  ||||||||| |||||| ||||  ||||| | |  ||||||| ||||||| ||||    
T  27524169 aaaattaaaaacagagaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaatac 27524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30554428 - 30554659
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| |||||||||||| ||| |  ||||||||| ||||| | || ||||||||||| ||||| |||||||||||  || ||||||| |||  ||| |||    
T  30554428 gatgggagaaagtgaataaatcattgagtattttttgttgtatttgaattttgagctcaatcacaagtgtgtgtgatgagggataatgttacaaaattgg 30554527  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
      ||||||| |   ||||||||  || |||  |||||||||| ||||||||||||  | ||||||||||||| ||| |||| ||||| ||||||||||||    
T  30554528 gaagtgaggatggcatcggttcgattcatcagttctttggatatcaaaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttc 30554627  T
Q  199 agttttaaactaaaccaaataaggtcggatac 230  Q
      |||| |||  ||| ||| ||||||||||||    
T  30554628 gattttgaaccgaactaaacaaggtcggatac 30554659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 11503210 - 11503446
Alignment:
Q  2 atgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--------gaaggataatattattaa 93  Q
    ||||||| ||||||||| |||| | ||||||||||||||  |||||||||||  | ||||||||||||||||||        || |||||||| || |||    
T  11503210 atgagaggaagtgaatggattatgtagtattttatgttgggctttaattttggacataatcataagtgtgtgtgtgtgtgaggagggataataatagtaa 11503309  T
Q  94 aatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttc 193  Q
    ||||| |||||||||||  || ||||| |||||||| ||  |||||||||||||| ||||  | |||||| ||||||   | |||| ||| | |||||||    
T  11503310 aatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttc 11503409  T
Q  194 ggttcagttttaaactaaaccaaataaggtcggatac 230  Q
    ||||| ||||| |||   |||| | ||||||||||||    
T  11503410 ggttcggttttgaaccttaccagacaaggtcggatac 11503446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44285840 - 44285632
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaagga----taatattattaaaat 96  Q
    |||| |||||||||||||||||| ||||||||||||||||  ||||      |||||||||||||||||||||||  ||||    |||||||| ||||||    
T  44285840 gatgggagaaagtgaatgaattatggagtattttatgttggccttt------gagcttaatcataagtgtgtgtgtcaggagtgataatattactaaaat 44285747  T
Q  97 ggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggt 196  Q
    || |||||||||||  || |||||             |||| || |||||||||||| || ||||| ||||||| ||| |||||||||||||||||||||    
T  44285746 ggggagtgaggttaacataggttc-------------tttgaatttcaaaattaaaaaccgagaactgaaccaaactaaatcgatttaggttggttcggt 44285660  T
Q  197 tcagttttaaactaaaccaaataaggtc 224  Q
    || ||||| |||  ||||||| ||||||    
T  44285659 tcggttttgaaccgaaccaaacaaggtc 44285632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 35847414 - 35847299
Alignment:
Q  9 aaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg----gaaggataatattattaaaatggagagtg 104  Q
    ||||||||||||||||  ||||| |||||||| | |||||||||  || ||||||||| ||||||||    ||  |||||||||| ||||||||||||||    
T  35847414 aaagtgaatgaattaaaaagtatattatgttggattttaattttaggcctaatcataaatgtgtgtgagatgagagataatattaataaaatggagagtg 35847315  T
Q  105 aggttactatcggttc 120  Q
    ||||||  ||||||||    
T  35847314 aggttagcatcggttc 35847299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 47831165 - 47831316
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggag 100  Q
    |||| ||||||||||| ||| |||||||||||||||  |   |||||||||| || || |  |||||||| || | ||||||||||||| |||||| | |    
T  47831165 gatgggagaaagtgaaagaagtaaggagtattttatacttggctttaattttaagtttgacgataagtgtttgagaaaggataatattagtaaaattggg 47831264  T
Q  101 agtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaa 153  Q
    |||| |||||  |||||||  ||| || | || ||||||||||||||| ||||    
T  47831265 agtg-ggttaacatcggtttggttcataggttttttggatctcaaaataaaaa 47831316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 13870415 - 13870329
Alignment:
Q  79 ggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaa 166  Q
    |||| |||||| |||||||| | ||||| |||  |||||||| || | ||| |||||||||||||||||| |||| ||||||||||||    
T  13870415 ggatgatattagtaaaatggggggtgag-ttagcatcggttcggtctttcggttctttggatctcaaaatcaaaaaccaagaaccgaa 13870329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 22240724 - 22240605
Alignment:
Q  79 ggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatc 178  Q
    ||||| |||||  ||||| ||||||||| |||  |||||||  |||||||| ||| ||||||||||||||  ||| || |||| |||||| | | |  ||    
T  22240724 ggatagtattagaaaaatagagagtgagattatcatcggtttggtttatcggttccttggatctcaaaatgtaaaaccgagaatcgaacccagcaaggtc 22240625  T
Q  179 gatttaggttggttcggttc 198  Q
    ||||||| ||||||||||||    
T  22240624 gatttagtttggttcggttc 22240605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 48070911 - 48070681
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||  || ||||| ||||| | ||||||    
T  48070911 gatgaaagaaagtgaatgaattaagaagtattttatgttggactttaattttgagattaatcataagtgtgtgtgaagagggatattattactgaaatgg 48070812  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     |||||||||||  ||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||| ||| |||| |||||||| |||||||||    
T  48070811 tgagtgaggttaacatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttc 48070712  T
Q  199 agttttaaactaaaccaaataaggtcggata 229  Q
     ||||| ||| ||| |||| |||||||||||    
T  48070711 ggttttgaaccaaatcaaacaaggtcggata 48070681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 44523590 - 44523758
Alignment:
Q  30 attttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagtgaggttactatcggttcagtttat 127  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||  ||  |||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  44523590 attttatgttggactttaattttgagcataatcataagtgtgtgtgaggagcgataatattactaaaatggagagtgaggttaatatcgattcagtttat 44523689  T
Q  128 cgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    || |||||||| ||||||||||||||  | |||||||||||||  ||||| | |||||||||||||||||    
T  44523690 cgtttctttgg-tctcaaaattaaaaatcgagaaccgaaccaaattatattggtttaggttggttcggtt 44523758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12471623 - 12471828
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| |||||||||| | ||  ||||||||||||||| ||||||||||||||||| | | |||||| ||||| ||  || ||||||||||| |||||||     
T  12471623 gatgggagaaagtgagtaaacaaaggagtattttatggtgaactttaattttgagttgattcataattgtgtatgaagagggataatattactaaaatga 12471722  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     |||||||||||  |||| ||||||| |||||||||||| ||||||||||||||| | ||||||||||| || ||| ||||||||| |||||||||||||    
T  12471723 ggagtgaggttaacatcgattcagttcatcgattctttgaatctcaaaattaaaaactaagaaccgaactaaactagatcgatttaagttggttcggttc 12471822  T
Q  199 agtttt 204  Q
     |||||    
T  12471823 ggtttt 12471828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 25545101 - 25545327
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtg--tgtgtggaaggataatattattaaaatggagagt 103  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||| || |||||||||||| |||||||| ||||    
T  25545101 gagaaagtgaatgaattatggagtattttatgttgacctttaattttgagcttaatcataagtgtatgtgaggcaggataatattactaaaatggggagt 25545200  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
    |||||||  || |||||  || || | |||||||||| | ||||||||||    |||||| |||||| ||| |||| ||||||||||||  |||| ||||    
T  25545201 gaggttagcattggttcgattcattggttctttggattttaaaattaaaagttgagaaccaaaccaaactagatcggtttaggttggtttagttcggttt 25545300  T
Q  204 taaactaaaccaaataaggtcggatac 230  Q
    | |||  ||||||  ||||||| ||||    
T  25545301 tgaaccgaaccaatcaaggtcgaatac 25545327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 31136431 - 31136239
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaaggataatattattaaaatggagagtg 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||| | |  ||||||||||| || ||||  |||||    
T  31136431 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattatgaatgtgtgcgagggggataatattactataatgatgagtg 31136332  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    || |||  |||||||| ||| |||| ||||||||||||| |||||  || ||||||||| ||||||  ||||| | |||||||||||||||||    
T  31136331 agtttagcatcggttcggttcatcggttctttggatctcgaaatttgaaaccaagaaccaaaccaaattatattggtttaggttggttcggtt 31136239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 12470903 - 12471116
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagt 103  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||| | | ||||||||  |||| ||  |||||||||||||| |||||||| ||||    
T  12470903 gagaaagtgaatgaatcaaggagtattttatggtggactttaattttgggttgaatcataatggtgtatgaagaaggataatattactaaaatggggagt 12471002  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
    ||| |||  |||| || |||| |||| || |||||||||||||||||||| |  |||||||||| || ||| | ||||||||||||||| |||||  |||    
T  12471003 gagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaactagaccgatttaggttggttaggttcgattt 12471102  T
Q  204 taaactaaaccaaa 217  Q
    | |||| |||||||    
T  12471103 tgaactgaaccaaa 12471116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 12470114 - 12470310
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggag 100  Q
    |||| |||| ||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||||||||  || ||||||||||| |||||||| |    
T  12470114 gatgggagagagtgaatgaatcaaagagtattttatgttggactttaattttgagttgaatcataagtgtgtgaagagggataatattactaaaatgggg 12470213  T
Q  101 agtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    | |||| |||  |||  || |||| |||| |||||||||||||||||||| || | |||||| ||||||| ||| || | |||||||||| ||||||    
T  12470214 actgagattagcatcaatttagttcatcggttctttggatctcaaaattagaaactaagaacggaaccaaactagattggtttaggttggctcggtt 12470310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 35738033 - 35738193
Alignment:
Q  10 aagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggtt 109  Q
    ||||||||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||  || ||||||||||| |||||||| ||||| ||||    
T  35738033 aagtgaatggattaaggagtattttatgttggaatttaattttgggcctaatcataagtgtgtgatgagggataatattagtaaaatggggagtggggtt 35738132  T
Q  110 actatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
    || ||| |||  ||| |||| ||| |||||||||||||| |||| |  |||||||||||||    
T  35738133 acaatcagtttggttgatcggttccttggatctcaaaatgaaaaactgagaaccgaaccaa 35738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 3996837 - 3997060
Alignment:
Q  4 gagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagt 103  Q
    |||||||||||||||| ||||| ||||||||||| |  |||||||||||| || |||||||||||||||| |||  | || ||||| |||||| | ||||    
T  3996837 gagagaaagtgaatgacttaagaagtattttatgcttgactttaattttgggcataatcataagtgtgtgaggagagttattattagtaaaattgggagt 3996936  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
    |  ||||| | |||||| ||| || | ||| |||||||||||||| |||| || ||||||||||||| | |  | | ||||| |||||| ||||| ||||    
T  3996937 ggagttaccaacggttcggttcataggttccttggatctcaaaatgaaaa-ccgagaaccgaaccaaacaaggttggtttagattggttaggttcggttt 3997035  T
Q  204 taaactaaaccaaataaggtcggat 228  Q
    | ||| |||||||| || |||||||    
T  3997036 tgaaccaaaccaaacaaagtcggat 3997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 12012835 - 12012983
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt-ggaaggataatattattaaaatggagagtg 104  Q
    ||||||||||||||||||  |||||||| ||||||| |||||||||| | ||||||||||| ||||| | ||| ||||||| ||| |||||||  | |||    
T  12012835 gagaaagtgaatgaattatagagtatttaatgttgacctttaattttaaacttaatcataaatgtgtataggagggataatcttactaaaatgaggggtg 12012934  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaa 153  Q
    ||||||  | |||||| |||||||| |||||||||| | ||||||||||    
T  12012935 aggttagcaccggttcggtttatcggttctttggattttaaaattaaaa 12012983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49124513 - 49124439
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  49124513 gatgggagaaagtgaatgaactaaggagtaatttatgttggactttaattttgagcttaatgataagtgtgtgtg 49124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 27226846 - 27226991
Alignment:
Q  45 ttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctca 144  Q
    ||||||||  || |||||||||||||||  ||| ||||||||||| |||||||||||||||| |||| ||||||        ||| ||| || ||||| |    
T  27226846 ttaattttaggcctaatcataagtgtgttaggagggataatattagtaaaatggagagtgagattaccatcggt--------tcggttccttagatctta 27226937  T
Q  145 aaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
    ||||||||| |||||||||||||||| | |  ||| ||||| ||||||||||||    
T  27226938 aaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttc 27226991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2501940 - 2502011
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgt 72  Q
    |||| ||||||| |||||||||| | |||||||||||||| ||| ||||||| |||||||||||||||||||    
T  2501940 gatgggagaaagggaatgaattatgaagtattttatgttgcactgtaatttttagcttaatcataagtgtgt 2502011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32971516 - 32971453
Alignment:
Q  12 gtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    ||||||| ||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  32971516 gtgaatggattaaagagtagtttatgttggactttaattttgagcctaatcataagtgtgtgtg 32971453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 2923180 - 2923122
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcat 64  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||    
T  2923180 gagaaagtgaatgaattaagtagttttttatgttggactttaattttgagcctaatcat 2923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 48638221 - 48638265
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattt 51  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  48638221 agaaagtgaatgaattaaagagtattttatgttgaactttaattt 48638265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46993545 - 46993471
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    ||||||||||| |||||| |||||  |||||||||||||| |||||||||||| |||||| | ||||| ||||||    
T  46993545 gatgagagaaattgaatggattaaaaagtattttatgttggactttaattttgggcttaaccttaagtttgtgtg 46993471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 2197566 - 2197753
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagtg 104  Q
    ||||||||||   |||||| ||||||||||||||  || |||||| || || || || ||||||||| |  |||||||||||||| |||||||| |||||    
T  2197566 agaaagtgaacatattaagtagtattttatgttgggctctaatttcgacct-aagcacaagtgtgtgcgaggaaggataatattagtaaaatggggagtg 2197664  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttc 193  Q
    | ||||  |||||||  ||| |||| ||  |||||||||||||| |||| || |||||| || ||| | |  ||||||||| |||||||    
T  2197665 aagttagcatcggtttggttgatcggtttcttggatctcaaaatgaaaaaccgagaacccaatcaaacaaggtcgatttagattggttc 2197753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 22331993 - 22332097
Alignment:
Q  126 atcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcg 225  Q
    |||| ||||||||||||||||||||||| || | || ||||| || ||| |||||||||||| |||| ||||  |||| ||||  ||||||| ||||| |    
T  22331993 atcggttctttggatctcaaaattaaaaaccgaaaatcgaacaaaactagatcgatttaggtcggtttggtttggtttcaaaccgaaccaaaaaaggtgg 22332092  T
Q  226 gatac 230  Q
    |||||    
T  22332093 gatac 22332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 46265213 - 46265290
Alignment:
Q  20 attaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatg 97  Q
    |||||| ||||||||||||    | ||||||||| || |||||||||||||||| ||||||| |||| || |||||||    
T  46265213 attaagtagtattttatgtatggcattaattttgggcataatcataagtgtgtgaggaaggacaataatagtaaaatg 46265290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 7352396 - 7352488
Alignment:
Q  137 ggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggata 229  Q
    ||||||| |||| |||| ||| ||||| |||||| ||| | || ||| | ||||||||| || |||| |||| ||||||||||| ||||||||    
T  7352396 ggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaaccaaaccaaataaagtcggata 7352488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 45595556 - 45595452
Alignment:
Q  71 gtgtggaaggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
    ||||| ||| ||||||||| |||||||| |||||| ||||  ||| ||||  |||||||  | |||| |||||||||||| ||| | |||||| ||||||    
T  45595556 gtgtgaaagaataatattactaaaatggggagtgatgttagcatcagttcgatttatcggatatttgaatctcaaaattagaattcgagaaccaaaccaa 45595457  T
Q  171 tctat 175  Q
     ||||    
T  45595456 actat 45595452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 53393044 - 53393275
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||    
T  53393044 gatgggagaaagtgaatgaattatggagcattttatgttgacctttaattttgagcttaatcagaagtgtgtgtgaagagggataatattactaaaatgg 53393143  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
    | ||||||||||  |||||||| ||| |||| ||| |||||| ||||| ||| || || ||||||||||||| ||| |||| ||||||||||||||||||    
T  53393144 aaagtgaggttagcatcggttcggttcatcggttcattggatttcaaagttataaaccgagaaccgaaccaaactagatcggtttaggttggttcggttc 53393243  T
Q  199 agttttaaactaaaccaaataaggtcggatac 230  Q
    ||||||||||  ||||||| ||||||||||||    
T  53393244 agttttaaaccgaaccaaacaaggtcggatac 53393275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42141536 - 42141319
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatgg 98  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||| | ||||||||| |||||||     
T  42141536 gatgagagaaagtgaatca-ttaaggagtattttatgttggactttaattttgagattaatcataagtgtgtgtgaggaggtataatattactaaaatga 42141438  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     ||||||| |||  ||||||        ||| ||||||||||||||||||||||| ||||||||||||||||  || ||||||||||||| |||| ||||    
T  42141437 ggagtgagtttagcatcggt--------tcggttctttggatctcaaaattaaaaaccaagaaccgaaccaaagtagatcgatttaggtttgttcagttc 42141346  T
Q  199 agttttaaactaaaccaaataaggtcg 225  Q
     ||||| |||  ||||||| |||||||    
T  42141345 ggttttgaaccgaaccaaagaaggtcg 42141319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 8606028 - 8606216
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtga 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||| || |||   || |||||| |||||||| |||||     
T  8606028 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgggcctaataataagtgtatgaggagaaattatattagtaaaatggggagtgt 8606127  T
Q  106 ggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcg 194  Q
    |||||| ||||||||  || || | ||| |||||||||||||| |||| |  ||||||||||||| | | |||| ||||| ||||||||    
T  8606128 ggttaccatcggttcgattcattggttccttggatctcaaaatgaaaaactgagaaccgaaccaaccaagatcggtttagattggttcg 8606216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 8056940 - 8056801
Alignment:
Q  67 gtgtgtgtggaaggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaa 166  Q
    ||||||| ||||||||||||||| |||||||| ||||| |||||  |||||||||||| |||| ||  |||||||||||||| ||||| | |||||||||    
T  8056940 gtgtgtgaggaaggataatattagtaaaatggggagtggggttaggatcggttcagttcatcggtttcttggatctcaaaatgaaaat-cgagaaccgaa 8056842  T
Q  167 ccaatctatatcgatttaggttggttcggttcagttttaaa 207  Q
    |||| | |  ||| ||||| |||||| | ||||||||||||    
T  8056841 ccaaacaagttcggtttagattggtttgtttcagttttaaa 8056801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 24466204 - 24466301
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataag--tgtgtgtggaaggataatattattaaaat 96  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||||||||||| ||| ||||||  |||||| || |||||||||||| ||||||    
T  24466204 gatgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaat 24466301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 19681969 - 19682078
Alignment:
Q  12 gtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaa-ggataatattattaaaatggagagtgaggtt 109  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||| ||| ||||||||||| |||||||   |||||||||    
T  19681969 gtgaataaattaaggagtattttatgtttgactttaattttgagcttaatcgtaagtgtatgtgagaagggataatattactaaaatgagaagtgaggtt 19682068  T
Q  110 actatcggtt 119  Q
    |  |||||||    
T  19682069 agcatcggtt 19682078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 23107800 - 23107893
Alignment:
Q  5 agagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataag--tgtgtgtggaaggataatattattaaaat 96  Q
    |||||||||||||| |||||  |||||||||||||| ||||||||||||||| ||| ||||||  |||||| || |||||||||||| ||||||    
T  23107800 agagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaat 23107893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 13207284 - 13207375
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaa-ttttgagcttaatcataagtgtg--tgtggaaggataatattattaaaa 95  Q
    |||||||||||| ||||| |||||||||||||||  |||||| ||||||||||||||||||||| |  ||  |||||||||||||| |||||    
T  13207284 agaaagtgaatggattaatgagtattttatgttgggctttaatttttgagcttaatcataagtgagcatgatgaaggataatattagtaaaa 13207375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 39838953 - 39839034
Alignment:
Q  42 actttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatggagagtgaggttactatcggttca 121  Q
    |||||||| ||||||||||||||||||||||||  |||  |||||||||| ||||  |  |||||||||||  |||||||||    
T  39838953 actttaatattgagcttaatcataagtgtgtgtgaggagagataatattactaaatcgaggagtgaggttagcatcggttca 39839034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 23107938 - 23108030
Alignment:
Q  137 ggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggata 229  Q
    ||||||| |||| |||| ||| ||| | |||||| ||| |||| ||| | ||||||||| || |||| |||| |||||||| |||||||||||    
T  23107938 ggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaaacaaggtcggata 23108030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5526513 - 5526283
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatgg 98  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||| |||||||| || ||||||||    
T  5526513 gatgacagaaagtgaatgaattaaggagtattttatgttggactttaattttgagtttaatcataagtgtgtgtaaggagggataataatactaaaatgg 5526414  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     ||||||| |||  |||||||| ||| |||  ||||||||||||||||||||||| |  ||||||||||||| ||| |||| ||||||||||||| ||||    
T  5526413 ggagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaactgagaaccgaaccaaactagatcggtttaggttggttc-gttc 5526315  T
Q  199 agttttaaactaaaccaaataaggtcggatac 230  Q
    |||||| |||  ||| ||| ||||||||||||    
T  5526314 agttttgaaccgaacaaaacaaggtcggatac 5526283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 27866889 - 27866677
Alignment:
Q  17 tgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggttactatcg 116  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  |||||||||| |||||||| ||||||||| || ||||    
T  27866889 tgaattaaggagtattttatgttggactttaattttgagattaatcataagtgtgtgaggagtgataatattactaaaatggtgagtgaggtaac-atcg 27866791  T
Q  117 gttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaa 216  Q
    |||||||| |||| ||||| ||||||||||||||||| || |||| |||||||| ||  ||| ||||| |||||||| |||| ||||| |||  ||||||    
T  27866790 gttcagttcatcggttcttgggatctcaaaattaaaaaccgagaatcgaaccaaactcgatcaatttaagttggttcagttcggttttgaaccgaaccaa 27866691  T
Q  217 ataaggtcggatac 230  Q
      ||||||||||||    
T  27866690 gcaaggtcggatac 27866677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 29109056 - 29109281
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataa--gtgtgtgtggaaggataatattattaaaatggagagt 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||| ||  ||||||||||| ||||||||  ||     
T  29109056 gagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattataattgtgtgtgaggggggataatattactaaaatgggaagg 29109155  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
     ||||||  |||| ||  ||| |||| ||||||||||||||||||||||| || |||||| |||||| ||| || | ||||||||| |||||||| ||||    
T  29109156 aaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttt 29109255  T
Q  204 taaactaaaccaaataaggtcggata 229  Q
    | |||| ||||||| |||||||||||    
T  29109256 tgaactgaaccaaacaaggtcggata 29109281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 37630625 - 37630434
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggag 100  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||| |    
T  37630625 gatgagagaaagtgaatgaattaagaagtatttgatgttggactttaattttgagcttaatcataagtgtgtgaggagggataatattactaaagtgggg 37630526  T
Q  101 agtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggtt 192  Q
    ||||| ||||  |||  ||| ||| | || ||| ||||||||||||||||||| || ||||| ||||||| ||| |||  ||||||||||||    
T  37630525 agtgatgttagcatccattcggttcaccggttcattggatctcaaaattaaaaaccgagaactgaaccaaactagatcagtttaggttggtt 37630434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 30906736 - 30906926
Alignment:
Q  8 gaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--------------------ggaaggataatat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                    |||||||||||||    
T  30906736 gaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataactgtgtgtgtgtgtgtgagatagagagaggaaggataatat 30906835  T
Q  88 tattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcg 179  Q
    || ||||||||  ||||||||||| |||| |||||||||| | ||||||||||||||||||| |||||| ||||||||| ||| ||||||||    
T  30906836 tactaaaatgggaagtgaggttaccatcgattcagtttattggttctttggatctcaaaatt-aaatccgagaaccgaatcaaactatatcg 30906926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 44018837 - 44019029
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtg--tggaaggataatattattaaaatggagagt 103  Q
    ||||||| ||| |||||||| | |||||||||||| ||||||||||||| |||| |||||||||||||   ||||| |||||||| ||||||| |||| |    
T  44018837 gagaaagcgaacgaattaagaaatattttatgttggactttaattttgaacttattcataagtgtgtgcaaggaagaataatattgttaaaattgagaat 44018936  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
     ||||||  |  ||||| ||| |||  || ||||||||||||||||||||||| ||||||||||||| ||| |||| |||| ||||||||||||    
T  44018937 aaggttagca-gggttcggttcatcagttttttggatctcaaaattaaaatccgagaaccgaaccaaactaaatcggtttaagttggttcggtt 44019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 30340661 - 30340514
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtga 105  Q
    |||||||||||||||| || |||||||||||||||||||||||||||  |  |||||||||||||||| ||| ||||||||||| |||||| | |||||     
T  30340661 gagaaagtgaatgaataaaagagtattttatgttgaactttaattttaggtctaatcataagtgtgtgaggagggataatattagtaaaatagggagtgg 30340562  T
Q  106 ggttactatcggttcagtttatcgattctttggatctcaaaattaaaa 153  Q
     |||||  | ||||||||| |||||||  ||| |||||||||| ||||    
T  30340561 agttaccgttggttcagttcatcgatttcttgaatctcaaaatgaaaa 30340514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 3689996 - 3690184
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt----ggaaggataatattattaaaat 96  Q
    ||||||||||||||||||||    ||||||||||| |||| |||||||||||||||||||||||||||||||||    ||| ||||||||||| ||||||    
T  3689996 gatgagagaaagtgaatgaa----ggagtattttacgttggactttaattttgagcttaatcataagtgtgtgtgcgaggagggataatattactaaaat 3690091  T
Q  97 ggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggt 196  Q
    || |||| ||||||  |||||||||             || ||||||||||||||||  | ||||||||||||| ||| |||| |||||||||||| |||    
T  3690092 ggggagtaaggttagcatcggttca-------------ttagatctcaaaattaaaaatcgagaaccgaaccaaactagatcggtttaggttggtttggt 3690178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 33036926 - 33037116
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcat--aagtgtgtgtggaaggataatattattaaaatgg 98  Q
    |||| |||||||  ||||||||| ||| |||| |||||||  ||||||||||||||||||||||  | ||||||| ||| ||||||||||| ||||||||    
T  33036926 gatgggagaaagcaaatgaattatggaatattatatgttgtcctttaattttgagcttaatcatagatgtgtgtgaggagggataatattactaaaatgg 33037025  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    ||||||| ||||  |||| |||||        ||||||| || ||||| ||||||  ||||||||||||||| ||| |||| |||| ||||||||||||    
T  33037026 agagtgaagttagcatcgattcag--------ttctttgaatttcaaatttaaaaatcaagaaccgaaccaaactaaatcggtttaagttggttcggtt 33037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10722094 - 10722020
Alignment:
Q  1 gatgagagaaagtgaat--gaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtg 73  Q
    |||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10722094 gatgggagaaagtgaatatgaattaaggagtattttatgttggactttaattttgagcttaatcataagtgtgtg 10722020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 4240883 - 4240757
Alignment:
Q  73 gtggaaggataatattattaaaatggag-agtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaat 171  Q
    ||||||||||||||||| |||||  ||| ||| | ||||  |||||||  ||||||||  ||||||||||||||||||||||| |||||||| ||| ||     
T  4240883 gtggaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaaactaaa 4240784  T
Q  172 ctatatcgatttaggttggttcggttc 198  Q
    |||||||||||| ||||||||||||||    
T  4240783 ctatatcgattttggttggttcggttc 4240757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22848096 - 22848170
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||| |||||||||||||||| | ||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  22848096 gatgggagaaagtgaatgaataatggagtattttatgttggcctttaactttgagcttaatcataagtgtgtgtg 22848170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 3919845 - 3919962
Alignment:
Q  100 gagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttca 199  Q
    |||||| ||||  |||||||| ||| |||| |||||| ||||||||||||||||   ||||||| |||||| ||| |||| ||||| ||||||||||||     
T  3919845 gagtgaagttagcatcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcg 3919944  T
Q  200 gttttaaactaaaccaaa 217  Q
    ||||| ||| ||||||||    
T  3919945 gttttgaaccaaaccaaa 3919962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28199875 - 28199803
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtg 73  Q
    |||| ||||||||||||| ||||||||||||| ||||||| |||||||||||  || ||||||||||||||||    
T  28199875 gatgggagaaagtgaatggattaaggagtattatatgttggactttaattttaggcctaatcataagtgtgtg 28199803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 38607266 - 38607058
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgt------gtgtggaaggataatattattaaa 94  Q
    ||||||| ||| |||||| |||||  |||||||||||||| |||| ||||||| || |||||||||||||      ||| ||| |||||| |||| ||||    
T  38607266 gatgagataaaatgaatggattaaatagtattttatgttggactt-aattttgggcctaatcataagtgtttgcgtgtgaggagggataacattagtaaa 38607168  T
Q  95 atggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcg 194  Q
    |||| ||||| |||||  |||   || ||| |||| || | ||||||||||||| |||| |||||||||||||||| | |  ||  ||||| ||||||||    
T  38607167 atggcgagtgtggttagcatcaaatcggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcg 38607068  T
Q  195 gttcagtttt 204  Q
    |||| |||||    
T  38607067 gttcggtttt 38607058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 35954764 - 35954865
Alignment:
Q  129 gattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggat 228  Q
    |||||||||||||||||||| |||| |  |||||| ||||||  || ||||| |||||||||||| ||||  |||||||| |||| ||| ||||||||||    
T  35954764 gattctttggatctcaaaatcaaaaactgagaaccaaaccaaattagatcgagttaggttggttcagttcgattttaaaccaaacaaaacaaggtcggat 35954863  T
Q  229 ac 230  Q
    ||    
T  35954864 ac 35954865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 4240965 - 4240915
Alignment:
Q  24 aggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  4240965 aggagtattttatgttgaac-ttaattatgagcttaatcacaagtgtttgtg 4240915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 7772064 - 7772159
Alignment:
Q  113 atcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaac 208  Q
    |||| |||| || |||| ||||||  |||| ||||| |||| |||| ||||||||||| ||| |||| ||||| ||||||||||||  ||||||||    
T  7772064 atcgattcaattcatcggttctttcaatctgaaaatcaaaaaccaaaaaccgaaccaaactagatcggtttagcttggttcggttcgattttaaac 7772159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 31111572 - 31111480
Alignment:
Q  137 ggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggata 229  Q
    |||||||||||| |||| ||| ||||| |||||| ||| |||| |||   ||||||| | ||||||| ||||  ||||||| |||||||||||    
T  31111572 ggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaaacaaggtcggata 31111480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 11846531 - 11846306
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatggagagtg 104  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||| |||||    
T  11846531 agaaagtggatgaattaaggagtattgtatgttggactttaattttgagcttaatcataagtgtgtgtgaggagggataatattactaaaatggggagtg 11846432  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagtttt 204  Q
    ||| ||  |||  ||  ||| || | ||| ||||||||||||||||||| || ||||||||||||| ||| |||| |||| |||||||| |||| |||||    
T  11846431 aggatagcatcaatttggttcattggttcattggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaagttggttcagttcggtttt 11846332  T
Q  205 aaactaaaccaaataaggtcggatac 230  Q
     ||| |||||||| ||||||||||||    
T  11846331 gaaccaaaccaaacaaggtcggatac 11846306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9827034 - 9826802
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataa--gtgtgtgtggaaggataatattattaaaatgg 98  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||||| ||| ||||||||||| ||||| ||    
T  9827034 gatgggagaaagtgaatgaattaaggagtattttatgttggactttaatattgagcttaatcataagcgtgtgtgaggagggataatattactaaaacgg 9826935  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
      ||||||||||  ||| |||  ||| |||| |||||||||| |||||||||||| || |||| |||||||| ||| |||| |||| |||||||||||||    
T  9826934 gaagtgaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccgagaatcgaaccaaactagatcggtttatgttggttcggttc 9826835  T
Q  199 agttttaaactaaaccaaat-aaggtcggatac 230  Q
     ||||| |||  |||||||| ||||||||||||    
T  9826834 ggttttcaaccgaaccaaataaaggtcggatac 9826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 23300706 - 23300496
Alignment:
Q  9 aaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtg--tgtggaaggataatattattaaaatggagagtgag 106  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||  || ||| ||||||||||| |||||||||||||||     
T  23300706 aaagtgaaagaattaaggagtattttatgttggactttaattttgagtttaatcataagtgtgtatgaggagggataatattactaaaatggagagtgaa 23300607  T
Q  107 gttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaa 206  Q
    ||||  |||||||| ||||         ||||||||||||||||||| || |||||||||| || ||| |||  |||||||||||||||||||||||| |    
T  23300606 gttagcatcggttcggttt--------gttggatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttga 23300515  T
Q  207 actaaaccaaataaggtcg 225  Q
    ||  ||||||| |||||||    
T  23300514 accgaaccaaacaaggtcg 23300496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2453998 - 2454229
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| |||||||||||||||||||| | |||||||||||| |||||||| ||||||||| ||||| |||| ||||  ||  ||||| |||| ||||||||    
T  2453998 gatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttattcataggtgtttgtgaggagcgataagattactaaaatgg 2454097  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     |||||||| ||  |||| ||| |||| | | ||||||||||||||||||||||| ||||||| |||||||| |||||||  ||||||||||||||||||    
T  2454098 ggagtgaggctagcatcgattcggtttgttggttctttggatctcaaaattaaaaaccaagaatcgaaccaaactatatcagtttaggttggttcggttc 2454197  T
Q  199 agttttaaactaaaccaaataaggtcggatac 230  Q
      |||| |||  |||| ||||| |||||||||    
T  2454198 gattttgaaccgaacctaataaagtcggatac 2454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 23586143 - 23585919
Alignment:
Q  10 aagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg----gaaggataatattattaaaatggagagtga 105  Q
    |||||||||||| ||||||||||||| |||| ||||||||||| ||||| ||||| ||||| ||||    |||  || |||||| |||||||||||||||    
T  23586143 aagtgaatgaatgaaggagtattttacgttggactttaatttttagcttcatcatcagtgtatgtgtgatgaaaaatgatattaataaaatggagagtga 23586044  T
Q  106 ggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagtttta 205  Q
    |  || |||||||||| |||||| ||| |||| |||||||||||||||||| |||||| |||||| |||||||| |||| ||| ||| ||||| |||||     
T  23586043 gactagtatcggttcaatttatcaattttttgaatctcaaaattaaaatccgagaaccaaaccaaactatatcggtttacgttagtttggttcggttttg 23585944  T
Q  206 aactaaaccaaataaggtcggatac 230  Q
    |||  ||| ||| ||||||||||||    
T  23585943 aaccgaacaaaacaaggtcggatac 23585919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 11971701 - 11971536
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatggagagtg 104  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||| ||||||||||| |||||||| |||||    
T  11971701 agaaagtggatgaattaaggagtattttatgttggactttaattttgagattaatcataagtgtgtgtgaggagggataatattactaaaatggggagtg 11971602  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
    ||| ||  ||| |||  ||| || ||||| ||||||||| ||||||||| || |||||||||||||    
T  11971601 aggatagcatcagtttggttcattgattcattggatctctaaattaaaaaccgagaaccgaaccaa 11971536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 7176377 - 7176599
Alignment:
Q  2 atgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtg--tgtgtggaaggataatattattaaaatgga 99  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||  |||| |||  |||||||||| ||||||||     
T  7176377 atgagagaaaataaatgaattaaggaatattttatgttggactttagttttgagcttaatcataagtgtttgtgaggagagataatattactaaaatggg 7176476  T
Q  100 gagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttca 199  Q
    |||||||||||  ||| ||        ||| ||| |||||||||||||| |||| |  | ||||||||||| ||| |||| ||||||||||||||||||     
T  7176477 gagtgaggttagcatctgt--------tcggttcattggatctcaaaataaaaaactgataaccgaaccaaactagatcggtttaggttggttcggttcg 7176568  T
Q  200 gttttaaactaaaccaaataaggtcggatac 230  Q
     |||| ||| |||||||| ||||| ||||||    
T  7176569 attttgaaccaaaccaaacaaggttggatac 7176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1208855 - 1208781
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||||||||||| || |||| |||||||||||||    
T  1208855 gatgagggaaagtgaatgaattaagtagtattttatgctgaactttaattttgggcctaatgataagtgtgtgtg 1208781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 32613784 - 32613966
Alignment:
Q  44 tttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatc 141  Q
    |||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||  | ||||||||  |||||||  ||| |||  ||||||||       
T  32613784 tttaattttgagcttaatcataagtgtgtgtgaggatgaataatattattaaaatgggaactgaggttagcatcggtttggttcatcagttctttgg--- 32613880  T
Q  142 tcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggatac 230  Q
       || |||||| |||| ||  ||||||| ||| |||| |||||||||||||||||| ||||| ||| || ||||| || ||| |||||    
T  32613881 ---aacttaaaaaccaaaaatggaaccaaactagatcggtttaggttggttcggttcggttttgaaccaagccaaacaaagtcagatac 32613966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 23301572 - 23301482
Alignment:
Q  135 ttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcg 225  Q
    ||||||||||||||||||| |  ||||||||||||| ||| |||  |||||||||||||||||| ||||| |||  ||||||| |||||||    
T  23301572 ttggatctcaaaattaaaaactgagaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcg 23301482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 7551292 - 7551454
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtga 105  Q
    ||||||||||||| |||||| |||||||| ||| |   |||||||||| |  |||||||||||||| |  || | ||||||||  ||||||||||||||     
T  7551292 gagaaagtgaatggattaagaagtattttttgtagtgatttaattttgggtctaatcataagtgtgag--gaggaataatatttgtaaaatggagagtgg 7551389  T
Q  106 ggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
    |||||| ||||||||  || |||| ||| ||| ||||| |||| ||||  |||||||||| ||||    
T  7551390 ggttaccatcggttcgattcatcgtttccttgtatctcgaaatgaaaaatcaagaaccgacccaa 7551454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 20722565 - 20722497
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||||||||||| |||||| |||| |||||||||  |||||||||||  | ||||||||||||||||||    
T  20722565 agaaagtgaatgcattaagaagtaatttatgttgggctttaattttggccctaatcataagtgtgtgtg 20722497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26880068 - 26880016
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttg 53  Q
    |||| ||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  26880068 gatgggagaaagtgaatggattaatgagtattttatgttgagctttaattttg 26880016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5416322 - 5416283
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttg 40  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  5416322 gatgagagaaagtgaatgaattaaagactattttatgttg 5416283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 12263264 - 12263165
Alignment:
Q  21 ttaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggttactatcggttc 120  Q
    |||||||||||||||| |||  |||||||||||  | |||| |||||||| || ||| ||||||| ||| ||||||||  ||||  ||||| ||||||||    
T  12263264 ttaaggagtattttatcttgggctttaattttggacataataataagtgtttgaggagggataattttagtaaaatggttagtggagttaccatcggttc 12263165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26186595 - 26186629
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtatttta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26186595 gatgagagaaagtgaatgaattaaagagtatttta 26186629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 16570757 - 16570981
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagtg 104  Q
    |||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||||||| ||||||||  || |||||||| || |||||||| |||||    
T  16570757 agaaagtgaacgaattaaggagtattttatattgtattttaattttgagtttaatcataaatgtgtgtgaggagggataataatactaaaatggggagtg 16570856  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagtttt 204  Q
    | ||||  |||||||||||| |||| |||||||||||||||||||||||  | |||||| ||||||  || |||| |||||||||||| ||||| |||||    
T  16570857 aagttagcatcggttcagttcatcggttctttggatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggtttt 16570956  T
Q  205 aaactaaaccaaataaggtcggata 229  Q
     ||| |||||||| ||||| |||||    
T  16570957 gaaccaaaccaaacaaggttggata 16570981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 3767551 - 3767776
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaagg-ataatattattaaaatggagagt 103  Q
    ||||||||||||| ||||||||  ||||||||||| |||||||||||||| ||||||||| ||||||||| ||||| ||||||||| |||||||| ||||    
T  3767551 gagaaagtgaatggattaaggataattttatgttggactttaattttgagtttaatcata-gtgtgtgtgagaagggataatattactaaaatggggagt 3767649  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttt 203  Q
    |||||||  |||||||| ||| |||| ||| |||||||||||||| |||| || |||||| |||||| ||| |||| ||||| |||||||||||| ||||    
T  3767650 gaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttt 3767749  T
Q  204 taaactaaaccaaataaggtcggatac 230  Q
    | |||  ||| ||| ||||||||||||    
T  3767750 tgaaccgaactaaacaaggtcggatac 3767776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32322097 - 32321865
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagctt-aatcataagtgtgtgtg--gaaggataatattattaaaatg 97  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||  ||  |||||||||| |||||||    
T  32322097 gatgggagaaagtaaatgaattaaggagtattttatgttggactttaatcttgagttttaatcataagtgtgtgtgaggagagataatattactaaaatg 32321998  T
Q  98 gagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    |||||||||||||  || ||||  |||||||| ||| ||| |||| |||||||||| || |||||||||||||  || |||| |||| |||| |||||||    
T  32321997 gagagtgaggttagcattggtttggtttatcggttcattgaatcttaaaattaaaaaccgagaaccgaaccaaattagatcggtttatgttgattcggtt 32321898  T
Q  198 cagttttaaactaaaccaaataaggtcggatac 230  Q
       ||||||||  ||||||| ||||||| ||||    
T  32321897 tgtttttaaaccgaaccaaacaaggtcgaatac 32321865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 9505327 - 9505114
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataa----------------gtgtgtgtggaaggataa 84  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||                ||||||| ||||||||||    
T  9505327 gatgggagaaagtgaatgaattaaggagtatcatatgttgaactttaattttgagcttaatcacaaatatgtgtgtgtgtgtgtgtgtgaggaaggataa 9505228  T
Q  85 tattattaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgattta 184  Q
    ||||| |||||||| ||||||||||   |||||||| |||||||| ||  |||||| ||||||||||||||| ||||||||||||| |||||||| |||     
T  9505227 tattactaaaatggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaattaaaatcctagaaccgaaccaaactatatcggtttt 9505128  T
Q  185 ggttggttcggttc 198  Q
    ||||||||||||||    
T  9505127 ggttggttcggttc 9505114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 9040704 - 9040511
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt--ggaaggataatattattaaaatggagagt 103  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||  ||| |||||||| || ||||||||  |||    
T  9040704 gagaaagtgaatgaattaagtagtattttatcttgagctttaattttgagcctaatcataagtgtgtgtgaggagggataataatagtaaaatgggaagt 9040605  T
Q  104 gaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    | |||||  |||   || ||| |||| ||  || ||||||||||| |||| || |||||| |||||| | | |||| ||||| |||||||||||    
T  9040604 ggggttagcatcaactcggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcggtt 9040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 25456027 - 25456252
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagtg 104  Q
    |||||||||||| |||||| |||| |||||| ||  ||||||||||| || || |||||||||||||||  || |||||||| || |||||||| |||||    
T  25456027 agaaagtgaatggattaagtagtactttatgctgggctttaattttgggcatactcataagtgtgtgtgaagagggataataatagtaaaatggggagtg 25456126  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagtttt 204  Q
    ||||||  ||| ||||  || |||| ||  |||||||||||||| |||| || | |||| |||||| | | || | ||||| ||| |||||||| |||||    
T  25456127 aggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaacaagattggtttagattgattcggttcggtttt 25456226  T
Q  205 aaactaaaccaaataaggtcggatac 230  Q
     |||| ||||| | ||||||||||||    
T  25456227 gaactgaaccagacaaggtcggatac 25456252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20860269 - 20860342
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgt 74  Q
    |||||||||||||||||  ||||||||||||||||||||  |||||||||||||  |||||| |||||||||||    
T  20860269 gatgagagaaagtgaatagattaaggagtattttatgttcgactttaattttgattttaatcttaagtgtgtgt 20860342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3555307 - 3555370
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcata 65  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||    
T  3555307 gatgagagaaagtgaatga-ttaatgagtattttatgttgaactttaattttaagctaaatcata 3555370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 25808174 - 25808345
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| ||||||||||||| |||||| |||| ||||||     ||||||||||  || || |||||||||||||||  || |||||||| ||||||||||     
T  25808174 gatgggagaaagtgaatggattaagtagtactttatgcacggctttaattttaggcatactcataagtgtgtgtgaagagggataataatattaaaatga 25808273  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
     |||||||||||  ||||||||  || |||||||  |||||||||||||| |||| || |||| | ||||||    
T  25808274 ggagtgaggttagcatcggttcgattcatcgatttcttggatctcaaaatgaaaaaccgagaatcaaaccaa 25808345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 37379932 - 37380089
Alignment:
Q  9 aaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtgaggt 108  Q
    |||||||||| |||||| || ||||||||||   |||||||||||||  ||| ||||||  |||| |||  |||||||||| |||||||||||||| |||    
T  37379932 aaagtgaatggattaagaagcattttatgttaggctttaattttgagtctaaccataagaatgtgaggagtgataatattagtaaaatggagagtggggt 37380031  T
Q  109 tactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaa 166  Q
    ||| || ||||| ||| | |  ||| || ||||||||||| |||| |  |||||||||    
T  37380032 taccattggttcggttcacccgttcgttagatctcaaaatgaaaaactgagaaccgaa 37380089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 34760833 - 34760894
Alignment:
Q  137 ggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
    |||||||||||| |||| ||||||||| |||||| ||| |||| ||||||||||||||||||    
T  34760833 ggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttc 34760894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25344001 - 25344075
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||| ||||||||||||| |||||| |||| |||||||||  ||||||||||  || || |||||||||||||||    
T  25344001 gatgggagaaagtgaatggattaagtagtactttatgttgggctttaattttttgcatactcataagtgtgtgtg 25344075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7239168 - 7239386
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtg--tgtgtggaaggataatattattaaaatgg 98  Q
    |||||||||||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||||||||  |||| |||  |||||||||| ||||||||    
T  7239168 gatgagagaaagtgaatgaagtaagaagtgttttatgttggactttagttttgagcttaatcataagtgcatgtgaggagagataatattactaaaatgg 7239267  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
      ||||||||||  ||||||||  |||||||  |||| |||||| ||||| |||| | |||||||||||||| |||  |||||||| |||||||||||||    
T  7239268 gaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagttggttcggttc 7239367  T
Q  199 agttttaaactaaaccaaa 217  Q
     ||||| ||| ||||||||    
T  7239368 ggttttgaaccaaaccaaa 7239386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7244344 - 7244562
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtg--tgtgtggaaggataatattattaaaatgg 98  Q
    |||||||||||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||||||||  |||| |||  |||||||||| ||||||||    
T  7244344 gatgagagaaagtgaatgaagtaagaagtgttttatgttggactttagttttgagcttaatcataagtgcatgtgaggagagataatattactaaaatgg 7244443  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
      ||||||||||  ||||||||  |||||||  |||| |||||| ||||| |||| | |||||||||||||| |||  |||||||| |||||||||||||    
T  7244444 gaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagttggttcggttc 7244543  T
Q  199 agttttaaactaaaccaaa 217  Q
     ||||| ||| ||||||||    
T  7244544 ggttttgaaccaaaccaaa 7244562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1498083 - 1498313
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaa-ggataatattattaaaatgg 98  Q
    |||| ||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||    
T  1498083 gatgggagaaagtgaatgtattaaggagtattttaggttggacttcaattttgagcttaatcataagtgtgtgcgagaagggataatattactaaaatgg 1498182  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     |||| | ||||  |||||||| ||| |||| ||  |||||||||||||| |||  |  |||||| |||  | ||| |||| ||||||||||||| ||||    
T  1498183 ggagtcatgttagcatcggttcggttcatcggtttattggatctcaaaataaaatactgagaaccaaacttaactacatcggtttaggttggttcagttc 1498282  T
Q  199 agttttaaactaaaccaaataaggtcggata 229  Q
     ||||| |||  ||||||| |||||||||||    
T  1498283 ggttttgaaccgaaccaaacaaggtcggata 1498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17770509 - 17770278
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg---gaaggataatattattaaaatg 97  Q
    |||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| ||| ||||   | ||| |||||||| |||||||    
T  17770509 gatgagatgaagtgaatgaattaaggagtattttatgttgggctttaattttgagcttaataataaatgtttgtgcgaggagggtaatattagtaaaatg 17770410  T
Q  98 gagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    |  |||| |||||  |||||||  ||| ||| ||||||||||||||||| |||||| ||||||||  || | | |||  ||| |||||||||||||||||    
T  17770409 ggaagtg-ggttagcatcggtttggttcatctattctttggatctcaaatttaaaaaccaagaactaaatccaactagttcggtttaggttggttcggtt 17770311  T
Q  198 cagttttaaactaaaccaaataaggtcggatac 230  Q
    ||| ||| ||| |||||||| ||| | ||||||    
T  17770310 cagctttgaaccaaaccaaaaaagattggatac 17770278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 39786247 - 39786074
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg---gaag-gataatattattaaaat 96  Q
    |||| ||||||| ||||| ||| | || ||||||||||   |||||||||||| | |||||||||||||||||||   |||| |||||||||| ||||||    
T  39786247 gatgggagaaagcgaatggattcatgactattttatgtcacactttaattttgggtttaatcataagtgtgtgtgcgagaagagataatattagtaaaat 39786148  T
Q  97 ggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
    ||||| |  |||||  ||||||||||||| |||  || |||||||||||| | ||||||  |||||||||||||    
T  39786147 ggagattcgggttagcatcggttcagtttgtcggatccttggatctcaaattgaaaatctgagaaccgaaccaa 39786074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31896180 - 31896083
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataag--tgtgtgtggaaggataatattattaaaat 96  Q
    |||||||||||||||||| ||||   | |||||||||||| |||||||||||| || ||| ||||||  |||||| || |||||||||||| ||||||    
T  31896180 gatgagagaaagtgaatggattataaaatattttatgttggactttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaat 31896083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11911883 - 11911651
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttga-actttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatg 97  Q
    |||| ||||||| |||| ||||||  ||||||||||||||  |||||||||||||||||||||||||||||| |||  || ||||||||||| | |||||    
T  11911883 gatgggagaaagcgaataaattaaacagtattttatgttgggactttaattttgagcttaatcataagtgtgcgtgatgagggataatattactcaaatg 11911784  T
Q  98 gagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggtt 197  Q
    | ||||||| ||| ||||||||  ||| |||| ||| | |||| |||||||||||| ||||||||  || ||| ||| |||| |||||||||||||||||    
T  11911783 gggagtgagtttagtatcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggtt 11911684  T
Q  198 cagttttaaactaaaccaaataaggtcggatac 230  Q
    | ||||| |||  ||||||| ||||||||||||    
T  11911683 cggttttgaaccgaaccaaacaaggtcggatac 11911651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 17530904 - 17530683
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactt----taattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaa 94  Q
    |||| |||||||||||||||||| | |||||||| ||||| ||||    |||||||||||||||||| |||||||||||  |||||||||||||| ||||    
T  17530904 gatgggagaaagtgaatgaatta-gaagtattttttgttggacttaatttaattttgagcttaatcacaagtgtgtgtgaagaaggataatattactaaa 17530806  T
Q  95 atggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcg 194  Q
    ||||||||||| ||||  |||||||  |||||| | |||||||||| ||||||  ||||||  |||||||||||||  ||||||| |||  |||||||||    
T  17530805 atggagagtgaagttagcatcggtttggtttattggttctttggatatcaaaaaaaaaatcggagaaccgaaccaaattatatcggttttagttggttcg 17530706  T
Q  195 gttcagttttaaactaaaccaaa 217  Q
    |||| ||||||||| ||| ||||    
T  17530705 gttcggttttaaaccaaatcaaa 17530683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 32678346 - 32678516
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| |||||| ||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||   || ||||||||||| ||||||||    
T  32678346 gatgtgagaaaatgaataaattaacgagtattttatgttga-ctttaattttgagtttaatcataagtgtgtgttatgagggataatattactaaaatgg 32678444  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaa 170  Q
     |||||||||||  ||| ||||  || |||| ||| ||||||||||||||||||| || |||||||| ||||    
T  32678445 ggagtgaggttagcatcagttcgattcatcggttcattggatctcaaaattaaaaaccgagaaccgagccaa 32678516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 8414581 - 8414698
Alignment:
Q  113 atcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaa 212  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||  ||||||| ||| || | |||| ||   |||||||||||||| ||| |||    
T  8414581 atcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaatagaaccaaactagattggtttatgtgtcttcggttcagttttgaaccaaa 8414680  T
Q  213 ccaaataaggtcggatac 230  Q
    ||||| ||||||||||||    
T  8414681 ccaaacaaggtcggatac 8414698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 4919693 - 4919574
Alignment:
Q  6 gagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaatggagagtga 105  Q
    ||||||||||||| || ||||||||||||||||||   | |||||||| |  |||||||||||||||| ||| ||||| ||||| ||||||||||||||     
T  4919693 gagaaagtgaatggatcaaggagtattttatgttgcgatctaattttgggtctaatcataagtgtgtgaggagggatagtattagtaaaatggagagtgg 4919594  T
Q  106 ggttactatcggttcagttt 125  Q
    | |||| ||| |||| ||||    
T  4919593 gattaccatcagttcggttt 4919574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 27320383 - 27320453
Alignment:
Q  13 tgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggata 83  Q
    |||||||||||  ||||||||||| |||  |||||||| ||| |||||||||||||||||| ||| |||||    
T  27320383 tgaatgaattagagagtattttatattgggctttaattctgaccttaatcataagtgtgtgaggagggata 27320453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 513132 - 513019
Alignment:
Q  117 gttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaa 216  Q
    |||| |||||||| ||  |||||||||||||||||||   ||||| |||| ||| ||| |||| |||||||||||||||||  ||||| |||  ||||||    
T  513132 gttcggtttatcggtttattggatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaa 513033  T
Q  217 ataaggtcggatac 230  Q
    | ||| | ||||||    
T  513032 acaagattggatac 513019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 25785910 - 25785818
Alignment:
Q  137 ggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaataaggtcggata 229  Q
    ||||||| |||| |||| ||| ||||| |||||| |||||||| ||| | ||||||||| || |||| ||||  ||||||| |||||||||||    
T  25785910 ggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaaccgaaccaaacaaggtcggata 25785818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8463 - 8233
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatgg 98  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||||||||||||| || |||| |||||||||||  || |||||||||||  ||||||     
T  8463 gatgggagaaagtgaatgaattaaagagtattt-atgttggactttaattttgagtttgatcaaaagtgtgtgtgaggagggataatattaccaaaatgc 8365  T
Q  99 agagtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttc 198  Q
     |||||||||||  | | |||| ||| ||||  ||||||||||| |||||  |||  | ||||||||||||| ||| ||||||||||||||||||  |||    
T  8364 ggagtgaggttagcaccagttcggttcatcggctctttggatctaaaaatacaaaatcgagaaccgaaccaaactagatcgatttaggttggttccattc 8265  T
Q  199 agttttaaactaaaccaaataaggtcggatac 230  Q
    |||||| |||  || |||| |||||| |||||    
T  8264 agttttgaaccgaaacaaacaaggtcagatac 8233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6599 - 6489
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaa-ggataatattattaaaatgg 98  Q
    |||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| || ||| ||||||||||| || |||||    
T  6599 gatgggagaaagtgaatgaattaaagagtattttatattga-ctttaattttgagcttaatcataagtgtgtatgagaagggataatattactagaatgg 6501  T
Q  99 agagtgaggtta 110  Q
     |||||||||||    
T  6500 ggagtgaggtta 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 6472 - 6394
Alignment:
Q  139 atctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaa 217  Q
    ||||||||||||||| || ||||||  | ||| ||| |||| |||||||||||||| |||| ||||||||  |||||||    
T  6472 atctcaaaattaaaaaccgagaaccagatcaaactagatcggtttaggttggttcgattcaattttaaaccgaaccaaa 6394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 344244 - 344349
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg-gaa-ggataatattattaaaatggagagtg 104  Q
    ||||||||||| |||||| || |||||||| ||| |||||||||||||||| ||||||| ||||||||| ||| ||||||||| | ||||||||||||||    
T  344244 agaaagtgaattaattaatgaatattttatattggactttaattttgagctgaatcatatgtgtgtgtgagaatggataatataactaaaatggagagtg 344343  T
Q  105 aggtta 110  Q
    ||||||    
T  344344 aggtta 344349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 469 - 566
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataag--tgtgtgtggaaggataatattattaaaat 96  Q
    |||||||||||||||||| |||||  |||||||||||||| ||||||||||||||| ||| ||||||  |||||| || |||||||||||| ||||||    
T  469 gatgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaat 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 14037 - 13812
Alignment:
Q  7 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg--gaaggataatattattaaaatggagagtg 104  Q
    |||||||||||| |||||| |||| |||||| ||  ||||||||||| || || |||||||||||||||  || | |||||| || |||||||| |||||    
T  14037 agaaagtgaatggattaagtagtactttatgctgggctttaattttgggcatactcataagtgtgtgtgaagaggtataataatagtaaaatggggagtg 13938  T
Q  105 aggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagtttt 204  Q
    ||||||  ||||||||  || |||| ||  |||||||||||||| |||| || | |||| ||||||   | |||  ||||| ||||||||||||  ||||    
T  13937 aggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcagtttagattggttcggttcgatttt 13838  T
Q  205 aaactaaaccaaataaggtcggatac 230  Q
     |||| ||||| | ||||||| ||||    
T  13837 gaactgaaccagacaaggtcgaatac 13812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34020 - 33946
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg 75  Q
    |||| ||||||||||||| |||||| |||| |||||||||  ||||||||||| || || |||||||||||||||    
T  34020 gatgggagaaagtgaatggattaagtagtactttatgttgggctttaattttgggcatactcataagtgtgtgtg 33946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 849 - 964
Alignment:
Q  9 aaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtg----gaaggataatattattaaaatggagagtg 104  Q
    ||||||||||||||||  ||||| |||||||| | |||||||||  || ||||||||| ||||||||    ||  |||||||||| ||||||||||||||    
T  849 aaagtgaatgaattaaaaagtatattatgttggattttaattttaggcctaatcataaatgtgtgtgagatgagagataatattaataaaatggagagtg 948  T
Q  105 aggttactatcggttc 120  Q
    ||||||  ||||||||    
T  949 aggttagcatcggttc 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1736 - 1830
Alignment:
Q  1 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatcataagtgtgtgtggaaggataatattattaaaat 96  Q
    |||||||||||||||||| |||||  |||||||||||||| | ||||||||| | | ||| ||||||| |||| || || ||||||||| ||||||    
T  1736 gatgagagaaagtgaatggattaaaaagtattttatgttggattttaatttt-aacctaaccataagtttgtgaggtagaataatattagtaaaat 1830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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