View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_low_37 (Length: 408)
Name: NF11932_low_37
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 386620 - 386242
Alignment:
| Q |
20 |
ttctgaacctatgaagagtgtgcaccgctgctataagggtggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386620 |
ttctgaacctatgaagagtgtgcaccgctgctataagggcggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactat |
386521 |
T |
|
| Q |
120 |
agcctttgggaaaagtttattctcataagcaaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgaca |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386520 |
agcctttgagaaaagtttattctcataagcaaccttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgaca |
386421 |
T |
|
| Q |
220 |
aagtactttgcagcaccttcctccaattcataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
386420 |
aagtactttgcagcaccttcctccaattcataatcaatacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtga |
386321 |
T |
|
| Q |
320 |
aaagtccacacataaacgagtgggccttatgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386320 |
aaagtccacacataaacgagtgggccttatgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatc |
386242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 38728922 - 38729300
Alignment:
| Q |
20 |
ttctgaacctatgaagagtgtgcaccgctgctataagggtggctccaacagacaagtttctaacatcaagggaccaagcaatgtgctgatcgaaaactat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38728922 |
ttctgaacctatgaagagtgtgcaccgcagctataagggcggctccaacagacaagtttctaacatcaagggaccaagctatgtgctgatcgaaaactat |
38729021 |
T |
|
| Q |
120 |
agcctttgggaaaagtttattctcataagcaaccttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38729022 |
agcctttgggaaaagtttattctcataagcaaccttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgaca |
38729121 |
T |
|
| Q |
220 |
aagtactttgcagcaccttcctccaattcataatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
38729122 |
aagtactttgcagcaccttcctccaattcataatcaatactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtga |
38729221 |
T |
|
| Q |
320 |
aaagtccacacataaacgagtgggccttatgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatc |
398 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38729222 |
atagtccacacataaacgagtgcgccttatgctttgttgcactaaggatagacatcaaatgcctctcattctcttcatc |
38729300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University