View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_38 (Length: 407)
Name: NF11932_low_38
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 91 - 388
Target Start/End: Complemental strand, 7160892 - 7160595
Alignment:
| Q |
91 |
ctttcaaaaatttaacatcaacatatctcaaattaattaattttgacccaccttttgcatagaacttaacttcgttacactgcctcaatattagtgtttg |
190 |
Q |
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| T |
7160892 |
cttttaaaaatttaacatcaagatatctcaaattaattaattttgacccaccttttgcatagaacttaacttcgttacactgcctcaatattagtgtttg |
7160793 |
T |
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| Q |
191 |
taggcaaataaaattacttatggatttagaaatgcttcccaaatctctgcaacgccacaaattaagatatcttaaatgcttcaattttccgattgattca |
290 |
Q |
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| T |
7160792 |
taggcaaacaaaattacctacggatttagaaatgcttcccaaatctctgcaacgccataagttaagatatcttaaatgcttcaattttccgattgattca |
7160693 |
T |
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| Q |
291 |
cacaccttagttaaagaacaacatgatatttttaggacgcgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaat |
388 |
Q |
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| T |
7160692 |
cacaccttacttaaagaacaacatgatatctataagacgcgtaagtatttgaattttaaaataacagatacttccttctcgttccaattctctgaaat |
7160595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7161019 - 7160935
Alignment:
| Q |
1 |
cactgaggtagagagattataacaacatttgttagcaaagaaaaccagtttacaaaaataacacccttattccaccaccacacac |
85 |
Q |
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| T |
7161019 |
cactgatgtagagagattatcacaatatttgtgagcaaagaaaaccagtttacaaaaataacaccattattccaccacgacacac |
7160935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 354
Target Start/End: Original strand, 3169022 - 3169195
Alignment:
| Q |
181 |
ttagtgtttgtaggcaaataaaattacttatggatttagaaatgcttcccaaatctctgcaacgccacaaattaagatatcttaaatgcttcaattttcc |
280 |
Q |
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| T |
3169022 |
ttagtgtttgtaagcaaaccatattagttatggatttaaaaacacttcccactcctctgcagtaccataagtcaagatatcttaaatgcttcaattttac |
3169121 |
T |
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| Q |
281 |
gattgattcacacaccttagttaaagaacaacatgatatttttaggacgcgtaagtatttgaattttaaaataa |
354 |
Q |
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| T |
3169122 |
aattgaatcacacaacttacataaagaacaatgtgatagcttcaagacgcgtaaatatttgaattttgaaataa |
3169195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 3172662 - 3172780
Alignment:
| Q |
249 |
aaattaagatatcttaaatgcttcaattttccgattgattcac---acaccttagttaaagaacaacatgatatttttaggacgcgtaagtatttgaatt |
345 |
Q |
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||||||||||||||||||||| |||||||||| ||||| |||| || |||| ||||||||||| || | || | |||||||||||||||||||| |
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| T |
3172662 |
aaattaagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaa---gacaacttcaagacgcgtaagtatttgaatt |
3172758 |
T |
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| Q |
346 |
ttaaaataacagatacttcctt |
367 |
Q |
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|| |||||| ||| | |||||| |
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| T |
3172759 |
ttgaaataaaagacaattcctt |
3172780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 3281330 - 3281394
Alignment:
| Q |
252 |
ttaagatatcttaaatgcttcaattttccgattgattcacacaccttagttaaagaacaacatga |
316 |
Q |
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| T |
3281330 |
ttaagatatcttaaatgtttcaattttccaattgaattagacaacttgcttaaagaacaatatga |
3281394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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