View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_39 (Length: 403)
Name: NF11932_low_39
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 5679745 - 5679641
Alignment:
| Q |
283 |
gcattaaatttcaggtttgaaattcttgaaaacaaatcgagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaacattgg |
382 |
Q |
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| T |
5679745 |
gcattaaatttcaggtttgaaattcttgaaaacaaatcgagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaacattgg |
5679646 |
T |
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| Q |
383 |
gaaaa |
387 |
Q |
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||||| |
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| T |
5679645 |
gaaaa |
5679641 |
T |
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Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 5679902 - 5679812
Alignment:
| Q |
129 |
atgttttaatatt--actttactacgttgtgacttaaaatttgagggttgcaaggcatgcaccggttgctcggaaataatgaagttaccac |
217 |
Q |
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| T |
5679902 |
atgttttaatattttactttactacgttgtgacttaaaatttgagggttgcaaagcatgcaccggttgctcggaaataatgaagttaccac |
5679812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 5984158 - 5984213
Alignment:
| Q |
321 |
gagggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaa |
376 |
Q |
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| T |
5984158 |
gagggttgctcaaaaaacaatgaagtcgccaccaaaggttattaaaataggaaaaa |
5984213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 38318980 - 38319034
Alignment:
| Q |
322 |
agggttgctcgtaaaacaataaagtcgtcaccaaaacttattaaaataggaaaaac |
377 |
Q |
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| T |
38318980 |
agggttgctcg-aaaacaacaaagttgccaccaaaatttattaaaataggaaaaac |
38319034 |
T |
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