View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_low_40 (Length: 397)
Name: NF11932_low_40
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_40 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 48585414 - 48585796
Alignment:
| Q |
1 |
aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48585414 |
aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata |
48585513 |
T |
|
| Q |
101 |
ttgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48585514 |
ttgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgatcatttgag |
48585613 |
T |
|
| Q |
201 |
aaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacgatcaccgtctggtaaaccatcatcaaagaactcgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48585614 |
aaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacgatcaccgtctggtaaaccatcatcaaagaactcgaa |
48585713 |
T |
|
| Q |
301 |
agagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgtctctg |
383 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48585714 |
agcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgtctctg |
48585796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 48639987 - 48640369
Alignment:
| Q |
1 |
aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
48639987 |
aggttcttcatttgtagggaaagatgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgacaaaacagaaggaata |
48640086 |
T |
|
| Q |
101 |
ttgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||| || ||||| | |
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|
| T |
48640087 |
ttgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatggtttgtttgaatcggcatgattctttatcatttgtg |
48640186 |
T |
|
| Q |
201 |
aaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacgatcaccgtctggtaaaccatcatcaaagaactcgaa |
300 |
Q |
| |
|
||||| || |||| |||||||||||||||||||| |||||||||||||||||||||| |||| | || |||||||||||||| |||||||||||||| |
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|
| T |
48640187 |
aaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaaggccgaaccactgccatctggtaaaccatcgtcaaagaactcgaa |
48640286 |
T |
|
| Q |
301 |
agagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgtctctg |
383 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48640287 |
agcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgtctctg |
48640369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 48661639 - 48661841
Alignment:
| Q |
1 |
aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| |||| || || ||||| ||| ||||||||||||| ||||| ||||||||||| |
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|
| T |
48661639 |
aggttcttcatttgatgggaaaggtaccaatttgtggacatagtcatagcaaacggcaaaaactgcactggaattagtccataataaagcagaaggaata |
48661738 |
T |
|
| Q |
101 |
ttgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgag |
200 |
Q |
| |
|
||||||||| ||| | ||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48661739 |
ttgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttgaatcagcatgattcttgatcatttgag |
48661838 |
T |
|
| Q |
201 |
aaa |
203 |
Q |
| |
|
||| |
|
|
| T |
48661839 |
aaa |
48661841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48667234 - 48667438
Alignment:
| Q |
1 |
aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata |
100 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| | |||| || |||||||||||||| |||||||||||| | ||| ||||||||||| |
|
|
| T |
48667234 |
aggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaacagcactagaattagtccataacaaagcagaaggaata |
48667333 |
T |
|
| Q |
101 |
ttgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgag |
200 |
Q |
| |
|
||||||||| ||| | ||||| ||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
48667334 |
ttgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgag |
48667433 |
T |
|
| Q |
201 |
aaata |
205 |
Q |
| |
|
||||| |
|
|
| T |
48667434 |
aaata |
48667438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 48618218 - 48618046
Alignment:
| Q |
31 |
tttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccat |
130 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||| || | | ||||| | ||| ||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
48618218 |
tttgtggaaatagttatagtaagcagaaaaaacagcagttgattgaatccataacaaagcagaaggaataccatgttcatcagctacatcacaaacccat |
48618119 |
T |
|
| Q |
131 |
ggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa |
203 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
48618118 |
ggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgattcttgatcatttgagaaa |
48618046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 48628983 - 48629155
Alignment:
| Q |
31 |
tttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccat |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||| | |||||| ||| ||||| ||||||||| |
|
|
| T |
48628983 |
tttgtggacatagttatagtaagtggcgaaaacagcactagaattattccatgataaagcagaaggaatgtcatgttcaaaagctacatcgcaaacccat |
48629082 |
T |
|
| Q |
131 |
ggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa |
203 |
Q |
| |
|
|| ||||| |||||||||||||| |||||| || ||||||||||||||||||| |||| ||||| |
|
|
| T |
48629083 |
ggaagaaaaggattgtatatgatacatgaaattggtttacttgaatcagcatgattcttgatcattttagaaa |
48629155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 48653207 - 48653409
Alignment:
| Q |
1 |
aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata |
100 |
Q |
| |
|
|||||||||||||| ||||||| || | |||||||| |||||| ||||||| ||| | |||||| | ||| | | |||| ||||||||||||||||| |
|
|
| T |
48653207 |
aggttcttcatttgaagggaaacgtaccagtttgtggaaatagttgtagtaagcggtaagaacagcggtggattgaacccataataaaacagaaggaata |
48653306 |
T |
|
| Q |
101 |
ttgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgag |
200 |
Q |
| |
|
||||||| ||| |||||||||||||| || ||| ||||||| |||||||| |||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
48653307 |
ccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactcagcatgattcttgatcatttgag |
48653406 |
T |
|
| Q |
201 |
aaa |
203 |
Q |
| |
|
||| |
|
|
| T |
48653407 |
aaa |
48653409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
| Q |
79 |
ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca |
178 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||||||||| || ||||||||||||||| |||| |||||||||| | ||| |
|
|
| T |
11547396 |
ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca |
11547495 |
T |
|
| Q |
179 |
gcatgattcttgataatttgaga |
201 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
11547496 |
acatgattcttgatcatttgaga |
11547518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 48653483 - 48653558
Alignment:
| Q |
277 |
taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgtta |
352 |
Q |
| |
|
||||| ||||||||||||||| |||| || | |||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
48653483 |
taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgtta |
48653558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 48661896 - 48661958
Alignment:
| Q |
276 |
gtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgt |
338 |
Q |
| |
|
|||||| || |||||||||||||||| || || ||||||||| || |||||||||||||||| |
|
|
| T |
48661896 |
gtaaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgt |
48661958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 19665565 - 19665402
Alignment:
| Q |
40 |
atagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnn |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| | | ||||| | ||| |||||||||||| |||| | ||| ||||||||||||||||| |
|
|
| T |
19665565 |
atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaagaaaa |
19665466 |
T |
|
| Q |
140 |
taattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa |
203 |
Q |
| |
|
|||||||||||| || |||| ||||||||| | ||| ||||||||| || |||||||||| |
|
|
| T |
19665465 |
ggattgtttatgatgcaagaaataggtttgtttgactcattatgattcttaatcatttgagaaa |
19665402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 375
Target Start/End: Complemental strand, 19665328 - 19665230
Alignment:
| Q |
277 |
taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagc |
375 |
Q |
| |
|
|||||||||||||||||| | |||| || || ||||||||| |||||||| | |||||| | ||||||||||| ||| | |||||| ||||||||| |
|
|
| T |
19665328 |
taaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagc |
19665230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 27228284 - 27228385
Alignment:
| Q |
31 |
tttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccat |
130 |
Q |
| |
|
|||||| | |||||||||||||| | |||||||||| |||| | | ||||| ||||| |||||||||| | | ||||| ||| ||||||| ||||||| |
|
|
| T |
27228284 |
tttgtgaaaatagttatagtaagctgcgaaaacagcaccggattgaatccataataaagcagaaggaatctcgagttcagcagctacatcactaacccat |
27228383 |
T |
|
| Q |
131 |
gg |
132 |
Q |
| |
|
|| |
|
|
| T |
27228384 |
gg |
27228385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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