View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_41 (Length: 396)
Name: NF11932_low_41
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 6611998 - 6611649
Alignment:
| Q |
18 |
actataccctataagagtataatgatagaatcaaatattaaggtaagcatattggattaagtttgaagtcttaagcagatgtgtgcttttactggtttat |
117 |
Q |
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| T |
6611998 |
actataccctataagagtataatgatagaatcaaatattaaggtaagcatattggattaagtttgaagtcttaagcagatgtgtgcttttactggtttat |
6611899 |
T |
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| Q |
118 |
gatctgaaccgtatatttcatccattgactcgtaagaatgtagggttgcttccacgttgtccgtgtcttct---atcttgaacagtatacgatctgtcca |
214 |
Q |
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| T |
6611898 |
gatctgaaccgtatatttcatccattgactcgtaagaatgtagggttgcttccacgttgtctgtatcttcttctatcttgaacagtatacgatctgtcca |
6611799 |
T |
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| Q |
215 |
tgctggtactcgaacctgtaaatcaacatgcacacatcatcatacacttacgtcacgaaatcatatagtatatccgtaatatgtcacacaaatggaaatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6611798 |
tgctggtactcgaacctgtaaatcaacatgcacacatcatcatacacttacgtcacgaaatcatatagtatatccgtaatatgtcacacaaatggaaatt |
6611699 |
T |
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| Q |
315 |
atgtacaagttgttttgtggagccagtttctagtcatgtacaagtttaag |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6611698 |
atgtacaagttgttttgtggagccagtttctagtcatgtacaagtttaag |
6611649 |
T |
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