View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_42 (Length: 387)
Name: NF11932_low_42
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 43149318 - 43148963
Alignment:
| Q |
14 |
atttatatttaagattggatagagtatgacatattcttatgaatatacaagagctcgatgaataagcaaagctccctcctacctatttgnnnnnnnnnnn |
113 |
Q |
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| T |
43149318 |
atttatatttaagattggatagagtatgacatattcttatgaatatacaagagctcgatgaataagcaaagctccctcctacctatttgtttttactttt |
43149219 |
T |
|
| Q |
114 |
nnnctactgtctagattgaaactataaatgttgagactatttgtagacaaatagatacaggtggagagtgagtcttatcctgtcatccaactcttgttta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43149218 |
tttctactgtctagattgaaactataaatgttgagactatttgtagacaaatagatacaagtggagagtgagtcttatcctgtcatccaactcttgttta |
43149119 |
T |
|
| Q |
214 |
acaagaaaaagatctaaatactctcatatatcttttattgaagaatttaataggaatattctccacgatatatacgtgcatgttaacgattaaagtcgtt |
313 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43149118 |
acaagaaaaagatctaaatactctcatatgtcttttattgaagaatttaataggaatattctccacgatatatacgtgcatgttaacgattaaagtcgtt |
43149019 |
T |
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| Q |
314 |
tcctttccctttcataataaaagtacnnnnnnnagaggcataataaagtattctttc |
370 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
43149018 |
tcctttccctttcataataaa-gtactttttttagaggcataataaagtattctttc |
43148963 |
T |
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