View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_43 (Length: 386)
Name: NF11932_low_43
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_43 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 31 - 386
Target Start/End: Complemental strand, 14223359 - 14223004
Alignment:
| Q |
31 |
tcaatcaatctagtggtgatttcgtatgtgcaaacaagttttatatgaatttgttgttttctaccaatatattgtttttgtcaatatgtagtaagttcag |
130 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14223359 |
tcaatcaatctagtggtgatttcgtatgtacaaacaagttttatatgaattcgttgttttctaccaagatattgtttttgtcaatatgtagtaagttcag |
14223260 |
T |
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| Q |
131 |
agatataagaaggcattcagacaaagatcacactctaaggtcaatagtcaggtgtgtgcttcaaatcaaggacgaatcatatatttttagatattttatt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
14223259 |
agatataagaaggcattcagacaaagatcacactctaaggtcaatagtcaggtgtgtgcttcaaatcaaggatgattcatatatttttagatattttatt |
14223160 |
T |
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| Q |
231 |
ttatttcagaaccacataaatgaggagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaa |
330 |
Q |
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| T |
14223159 |
ttattttagaaccacataaatgaggagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaa |
14223060 |
T |
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| Q |
331 |
atgtccatgaattttacaaacgccgaccaatttcatcccttctcatacctactgtc |
386 |
Q |
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| T |
14223059 |
atgtccatgaattttacaaacgccgtccaatttcatcccttctcatacctactgtc |
14223004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 12659515 - 12659413
Alignment:
| Q |
268 |
ttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaaatgtccatgaattttacaaacgccgaccaatttcatc |
367 |
Q |
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| T |
12659515 |
ttttcgtctttcaatttgtacacaccggtcaattttgtcctcaaattttttgaaatagctaaaaggtctttgaactttacaaaagtcgatcaatttcatc |
12659416 |
T |
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| Q |
368 |
cct |
370 |
Q |
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||| |
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| T |
12659415 |
cct |
12659413 |
T |
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Target: scaffold0037 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 34262 - 34354
Alignment:
| Q |
255 |
gagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaaatgtccatgaattttac |
347 |
Q |
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| T |
34262 |
gagtgaataggcttttccatccttcaatttgcatgcaccagtcaatttcatcctcagattaatcgaaatagttaatacgtccctgaattttac |
34354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 18338280 - 18338384
Alignment:
| Q |
258 |
tgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaaatgtccatgaattttacaaacgccgac |
357 |
Q |
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|||||| || |||| ||||||||||||| | || || |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |
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| T |
18338280 |
tgaataggcatttttgtccttcaatttgcacacatcgatcaatttaatcctcaaattattcgaaatagttaaaatgtctttgaattttacaaacgtcgat |
18338379 |
T |
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| Q |
358 |
caatt |
362 |
Q |
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| T |
18338380 |
caatt |
18338384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 45100332 - 45100261
Alignment:
| Q |
255 |
gagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagc |
326 |
Q |
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| T |
45100332 |
gagtgaatatgttttttcctccttaaatttgtatgcaccggtcaattgcatccccaaattattcgaaatagc |
45100261 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 1752580 - 1752642
Alignment:
| Q |
255 |
gagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattatt |
317 |
Q |
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| T |
1752580 |
gagtgaataggcttttttgtctttcaatttgaatgcatcggtcaatttcgtcctcaatttatt |
1752642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 350
Target Start/End: Complemental strand, 32839428 - 32839332
Alignment:
| Q |
255 |
gagtgaataagctttttcgtcctt-caatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaaatgtccatgaattttacaaa |
350 |
Q |
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||||||||| ||||||| |||||| ||| ||||| | ||| ||||||| |||| ||||| || |||||||||||| || ||||||||||||||| |
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| T |
32839428 |
gagtgaataggcttttttgtcctttcaacttgtacatatcggtcaatttcatccttaaattttttaaaatagctaaaacgtacatgaattttacaaa |
32839332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 5988164 - 5988103
Alignment:
| Q |
254 |
ggagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaatta |
315 |
Q |
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| T |
5988164 |
ggagtgaataggctttttcgtctttcaatttatacgtaccggtcaattttgtcctcaaatta |
5988103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 10428200 - 10428292
Alignment:
| Q |
255 |
gagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaaatgtccatgaattttac |
347 |
Q |
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||||||||| |||||| | |||||||||||| | |||| | ||||||| ||| ||||||| ||||||||| ||| | |||| |||||||||| |
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| T |
10428200 |
gagtgaataggcttttacatccttcaatttgcacacaccagtcaatttcatccgcaaattaatcgaaatagttaatacgtccctgaattttac |
10428292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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