View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_44 (Length: 379)
Name: NF11932_low_44
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 49302040 - 49302385
Alignment:
| Q |
22 |
cagatatagttcaatcactatgtgaacctgaagaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgctcaatggattgtc |
121 |
Q |
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| T |
49302040 |
cagatatagttcaatcactatgtgaacctgaagaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgcttaatggattgtc |
49302139 |
T |
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| Q |
122 |
ttttgtaaaatcagatattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggagaaaaa |
221 |
Q |
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| T |
49302140 |
ttttgtaaaatcagatattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggagaaaaa |
49302239 |
T |
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| Q |
222 |
caaaatgaagaaattgttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtgggctttaagaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49302240 |
caaaatgaagaaattgttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtggtctttaagaa |
49302339 |
T |
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| Q |
322 |
ttgggaactgaaagggtacaaagttcaaattgtactatggtctgtg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49302340 |
ttgggaactgaaagggtacaaagttcaaattgtactatggtgtgtg |
49302385 |
T |
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