View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_48 (Length: 340)
Name: NF11932_low_48
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_48 |
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| [»] scaffold0070 (2 HSPs) |
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| [»] scaffold0955 (2 HSPs) |
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Alignment Details
Target: scaffold0070 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19296 - 19515
Alignment:
| Q |
1 |
tctatgctttgataatattgaagctgaagttgtgcaagttgctctaatttaataatttgatgatccaagtcaccaacataaacactattcaacttttgca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19296 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtatagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca |
19395 |
T |
|
| Q |
101 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcattttttaaaaatcttattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19396 |
gcacatccatcgcaatttcctcaacaagttcagcttatgttctgtttgtacaaacatggaaaaatatagacatacttcattttttaaaaatctaattttt |
19495 |
T |
|
| Q |
201 |
ctaatagttaatcaaataac |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19496 |
ctaatagttaatcaaataac |
19515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38693 - 38866
Alignment:
| Q |
1 |
tctatgctttgataatattgaagctgaagttgtgcaagttgctctaatttaataatttgatgatccaagtcaccaacataaacactattcaacttttgca |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| | |||||||||||| |
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| T |
38693 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctaatttaataatttgct-----------ctaatttaatattgaatcaacttttgca |
38781 |
T |
|
| Q |
101 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcatttttt |
185 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
38782 |
gcacacccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt |
38866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25692627 - 25692409
Alignment:
| Q |
1 |
tctatgctttgataatattgaagctgaagttgtgcaagttgctctaatttaataatttgatgatccaagtcaccaacataaacactattcaacttttgca |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25692627 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca |
25692528 |
T |
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| Q |
101 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcattttttaaaaatcttattttt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25692527 |
gcacatccattgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatggaaaaatatagacatacttcattttttaaaaatcttattttt |
25692428 |
T |
|
| Q |
201 |
ctaatagttaatcaaataa |
219 |
Q |
| |
|
||||||| ||||||||||| |
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| T |
25692427 |
ctaatagctaatcaaataa |
25692409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 25384278 - 25384122
Alignment:
| Q |
1 |
tctatgctttgataatattgaagctgaagttgtgcaagttgctctaatttaataatttgatgatccaagtcaccaacataaacactattcaacttttgca |
100 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| |||| |||||||||| |||| |||||||| |
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| T |
25384278 |
tctatgcttttatagtattgtagctgaagttgtgcaagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgca |
25384179 |
T |
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| Q |
101 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacat |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25384178 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttatacaaacat |
25384122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 25602696 - 25602609
Alignment:
| Q |
43 |
tctaatttaataatttgatgatccaagtcaccaacataaacactattcaacttttgcagcacatccatcgcaatttcctcaacaagtt |
130 |
Q |
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||||||||| ||||||| |||||||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
25602696 |
tctaatttagtaatttgttgatccaagtcaccaacataaagacgattcaaattttgcagcacatccattgcaatttcctcaacaagtt |
25602609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 25389456 - 25389413
Alignment:
| Q |
179 |
attttttaaaaatcttatttttctaatagttaatcaaataacat |
222 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25389456 |
attttttaaaaatcttatttttctaatagtaaatcaaataacat |
25389413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 25383543 - 25383499
Alignment:
| Q |
275 |
tttcctctcttgttatctaatatacttgagaacttccctttttat |
319 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
25383543 |
tttcctctcttattatctaatatacttgacaacttccctttttat |
25383499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 25645407 - 25645360
Alignment:
| Q |
275 |
tttcctctcttgttatctaata---tacttgagaacttccctttttat |
319 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
25645407 |
tttcctctcttgttatctaataatatacttgagaaattccctttttat |
25645360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 25384122 - 25384082
Alignment:
| Q |
182 |
ttttaaaaatcttatttttctaatagttaatcaaataacat |
222 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||| |
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| T |
25384122 |
ttttaaaaatcttaaatttccaatagttaatcaaataacat |
25384082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 3747 - 3574
Alignment:
| Q |
1 |
tctatgctttgataatattgaagctgaagttgtgcaagttgctctaatttaataatttgatgatccaagtcaccaacataaacactattcaacttttgca |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| | |||||||||||| |
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| T |
3747 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctaatttaataatttgct-----------ctaatttaatattgaatcaacttttgca |
3659 |
T |
|
| Q |
101 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcatttttt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
3658 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt |
3574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 3464 - 3418
Alignment:
| Q |
176 |
ttcattttttaaaaatcttatttttctaatagttaatcaaataacat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464 |
ttcattttttaaaaatcttatttttctaatagttaatcaaataacat |
3418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 16499164 - 16499236
Alignment:
| Q |
61 |
tgatccaagtcaccaacataaacactattcaacttttgcagcacatccatcgcaatttcctcaacaagttcag |
133 |
Q |
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||||| ||||||||||||||||| | ||| || |||| || |||||| ||||||||| ||||| |||||||| |
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| T |
16499164 |
tgatctaagtcaccaacataaactcgatttaatttttccaatacatccttcgcaattttctcaagaagttcag |
16499236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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