View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_5 (Length: 757)
Name: NF11932_low_5
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 319 - 741
Target Start/End: Original strand, 45863301 - 45863716
Alignment:
| Q |
319 |
ttaaatctaaatgcaacatagattaggattatcagggtaactaccggcctgcacttcgaacaggaccacataattgttaaccattcctccatgatgacca |
418 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863301 |
ttaactctgaatgcaacatagattaggattatcagggtaactacc----tgcactttgaacaggaccacataattgttaaccattcctccatgatgacca |
45863396 |
T |
|
| Q |
419 |
aggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagagctttaaggacctcagtcatta |
518 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863397 |
agga---tgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagagctttaaggacctcagtcatta |
45863493 |
T |
|
| Q |
519 |
tctcatgaggttgggcttgagactatcacaaagtcaacaaacagaacaaacaacttaaagacatcagtaatagaaacataatcggttgaaacaatcacaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863494 |
tctcatgaggttgggcttgagactatcacaaagtcaacgaacagaacaaacaacttaaagacatcagtaatagaaacataatcggttgaaacaatcacaa |
45863593 |
T |
|
| Q |
619 |
acatacaacaattaatttattaacagctaggaatgattgcttgtgatggtggaataatttatagatgccaagtaatataaaatcattacggaatccagtt |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863594 |
acatacaacaattaatttattaacagctaggaatgattgcttgtgatggtggaataatttatagatgccaagtaatataaaatcattacggaatccagtt |
45863693 |
T |
|
| Q |
719 |
ttgacacaaaaaacctaacaaat |
741 |
Q |
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|||| || ||||||||||||||| |
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| T |
45863694 |
ttgatacgaaaaacctaacaaat |
45863716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 5e-61; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 17408100 - 17407929
Alignment:
| Q |
40 |
cccccatgtgagtgtactatctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctt |
139 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||| |||||||| |||| |
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| T |
17408100 |
cccccatgtgagtgtactatctttgcattagagaacgcgaagctgtgcaaggaaggcggcacaaagatccaagaaaagaaactggggaccctcaagcctt |
17408001 |
T |
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| Q |
140 |
tgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatattaacacaagtttgagaatgtt |
211 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||| |
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| T |
17408000 |
tgaagatcaagcagatatttctcctgagttttgtacagctgtgaaagatattaacataggtttgagaatgtt |
17407929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 4049648 - 4049825
Alignment:
| Q |
34 |
tcaagtcccccatgtgagtgtactatctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctca |
133 |
Q |
| |
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||||||||| |||||||||| ||||| || | |||| ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
4049648 |
tcaagtccctcatgtgagtgcactatattcgcactacagaacacgaagctgcgcaaggaaggcagcacaaagatccaagaaaagaaactggggtccctca |
4049747 |
T |
|
| Q |
134 |
accctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatattaacacaagtttgagaatgtt |
211 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
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| T |
4049748 |
agtctttgaagatcaagcagatatttctcctgagttttgtacagctgtaaaagatattaacaaatgtttgagaatgtt |
4049825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 385 - 565
Target Start/End: Complemental strand, 17407207 - 17407031
Alignment:
| Q |
385 |
cacataattgttaaccattcctccatgatgaccaaggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattc |
484 |
Q |
| |
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|||| |||||||| |||||||||||||||||||| ||| ||| |||| ||| |||||||||||| |||||||||||||||| || |||| | ||| || |
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| T |
17407207 |
cacagaattgttatccattcctccatgatgaccagggatgat---aacagcccatctgcacttcatgttatagggtccaatttttttccaacagacactc |
17407111 |
T |
|
| Q |
485 |
aattgttccagagctttaaggacctcagtcattatctcatgaggttgggcttgagactatcacaaagtcaacaaacagaac |
565 |
Q |
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|||| || ||||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
17407110 |
aattcttgcagagctttaaggacttcggtcattatttcacgaggttgggctcgagactatcac-atgtcaacaaacagaac |
17407031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 402 - 586
Target Start/End: Original strand, 4050596 - 4050776
Alignment:
| Q |
402 |
ttcctccatgatgaccaaggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttccagagcttt |
501 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||| |||||||||||| |||||||||||||||| || |||| | ||||||| || || ||||||||| |
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| T |
4050596 |
ttcctccatgatgaccaggga---tgccaacggcccatctgcacttcatgttatagggtccaatttttttccaacagacattcagttcttgcagagcttt |
4050692 |
T |
|
| Q |
502 |
aaggacctcagtcattatctcatgaggttgggcttgagactatcacaaagtcaacaaacagaacaaacaacttaaagacatcagt |
586 |
Q |
| |
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|||||| || |||||||| ||| |||| || ||| |||||| |||| | ||||||||||||||| |||| ||||||||||||||| |
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| T |
4050693 |
aaggacttcggtcattatttcacgaggctgcgctcgagactgtcac-atgtcaacaaacagaaccaacagcttaaagacatcagt |
4050776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 395 - 577
Target Start/End: Complemental strand, 17411660 - 17411482
Alignment:
| Q |
395 |
ttaaccattcctccatgatgaccaaggaggatgccaacatcccttctgcacttcatcttatagggtccaatttgttcccaataaacattcaattgttcca |
494 |
Q |
| |
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|||||||||||||| ||||||||| ||| || ||||| || | |||||||||| |||||||||||||||| || |||| | |||||||||| || || |
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| T |
17411660 |
ttaaccattcctccttgatgaccagggatga---caacagtccatatgcacttcatgttatagggtccaatttttttccaacagacattcaattcttgca |
17411564 |
T |
|
| Q |
495 |
gagctttaaggacctcagtcattatctcatgaggttgggcttgagactatcacaaagtcaacaaacagaacaaacaacttaaa |
577 |
Q |
| |
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||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||| | ||||||||||| ||| |||| |||||| |
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| T |
17411563 |
gagctttgaggacgtcagtcattatttcacgaggttgggctcgagactatcac-atgtcaacaaacaaaaccaacagcttaaa |
17411482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 17412678 - 17412546
Alignment:
| Q |
78 |
gaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaa |
177 |
Q |
| |
|
||||| || ||||||||| || |||||||||||||||| || |||| ||||||| |||||||| ||||| ||||||||||||| |||||||||||| |
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|
| T |
17412678 |
gaagccgctcaaggaaggaagcacaaagatccaagaaagcaaattggggtccctcaagcctttgaatatcaagtagatatttctcctcagttttgtacaa |
17412579 |
T |
|
| Q |
178 |
ctgtaaaagatattaacacaagtttgagaatgtt |
211 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| |
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| T |
17412578 |
ctacaaaagatattaacacaa-cttgagaatgtt |
17412546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 17407393 - 17407310
Alignment:
| Q |
262 |
agcatcagtgaatgaggatgaaaaagttactaataagtcggtaattaaacaattcatttaaatctaaatgcaacatagattagg |
345 |
Q |
| |
|
||||||| ||||||| |||||||||||| || || |||||| || ||||||| |||||||||||||||||||||||||||| |
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|
| T |
17407393 |
agcatcaatgaatgacaatgaaaaagttaatactataccggtaaatatacaattcgtttaaatctaaatgcaacatagattagg |
17407310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 699
Target Start/End: Original strand, 4050955 - 4051056
Alignment:
| Q |
598 |
aatcggttgaaacaatcacaaacatacaacaattaatttattaacagctaggaatgattgcttgtgatggtggaataatttatagatgccaagtaatata |
697 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| || ||||| ||| | ||| ||||| ||||||||||| ||| ||| |||||||||| || ||| |
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|
| T |
4050955 |
aatcagttgaaacaatcacaaacatccaacaattatttcattaaaagccacaaattgttgctagtgatggtggagtaaattaaagatgccaagcaaaata |
4051054 |
T |
|
| Q |
698 |
aa |
699 |
Q |
| |
|
|| |
|
|
| T |
4051055 |
aa |
4051056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 4050474 - 4050515
Alignment:
| Q |
304 |
aattaaacaattcatttaaatctaaatgcaacatagattagg |
345 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
4050474 |
aattaaacaattcgtttaaatcgaaatgcaacatagattagg |
4050515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 336
Target Start/End: Complemental strand, 17411786 - 17411753
Alignment:
| Q |
303 |
taattaaacaattcatttaaatctaaatgcaaca |
336 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
17411786 |
taattaaacaattcatttaaatctaaatgaaaca |
17411753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 2783333 - 2783518
Alignment:
| Q |
2 |
cataagcttattcacatgcaacataatacacctcaagtcccccatgtgagtgta----ctatctttgtactagagaacgcgaagctgcgcaaggaaggca |
97 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| ||||||| | | ||| ||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
2783333 |
cataagcttattcac--gcaacataataaacctcaagtccctcatgtgacttaattccctagctttgcactagagaacacgaagctgcgcaaggaaggca |
2783430 |
T |
|
| Q |
98 |
gaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaa |
185 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||||||||| |||| |||||| ||||||||||||||||| | |||||||| |
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|
| T |
2783431 |
acacaaagatccaagaaaagaaactggggatcctcaaccctttgaagatcaaacagatacttctcctgagttttgtagagctgtaaaa |
2783518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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