View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_51 (Length: 337)
Name: NF11932_low_51
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 45825462 - 45825783
Alignment:
| Q |
1 |
atataataatctcaatattatttataaatttgtcacattcctaagttgattatgtagtggcatgtgaatttaaaacctatgtgtcggactttcttctctt |
100 |
Q |
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| T |
45825462 |
atataataatctcaatattatttataaatttgtcacattcctaagttgattatgtagtggcatgtgaatttaaaacctatgtgtcggactttcttctctt |
45825561 |
T |
|
| Q |
101 |
tccgccggccagtaagcttctccttaccttcttttgttttgttaaatcgtgttttataattatttctttcactttgaattaaataaacaaatatcaattg |
200 |
Q |
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| T |
45825562 |
tccgccggccagtaagcttctccttaccttcttttgttttgttaaatcgtgttttataattatttctttcactttgaattaaataaacaaatatcaattg |
45825661 |
T |
|
| Q |
201 |
atcaatagattaatgaaacgattctttagctatccggtaatcatggcgagcatttacgttgtgatgcaaagatacaataggacagcgaggagtgacgacg |
300 |
Q |
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| T |
45825662 |
atcaatagattaatgaaacgattctttagctatccggtaatcatggcgagcatttacgttgtgatgcaaagatacaataggacagcgaggagtgacgacg |
45825761 |
T |
|
| Q |
301 |
atatctttatctttctactttt |
322 |
Q |
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| T |
45825762 |
atatctttatctttctactttt |
45825783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 51156317 - 51156176
Alignment:
| Q |
123 |
cttaccttcttttgttttgttaaatcgtgttttataa--ttatttctttcactttgaattaaataaacaaatatcaattgatcaatagattaatgaaacg |
220 |
Q |
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| T |
51156317 |
cttaccttcttttgttttgttaaatcgtgttttataattttatttctttcacttttaatcaaataaacaaatattaat-------tttattaatgatacg |
51156225 |
T |
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| Q |
221 |
attctttagctatccggtaatcatggcgagcatttacgttgtgatgcaa |
269 |
Q |
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| T |
51156224 |
attcttcagccttgaggtactcatggcgagcatttacgttgtgatgcaa |
51156176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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