View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_52 (Length: 329)

Name: NF11932_low_52
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_52
NF11932_low_52
[»] chr7 (10 HSPs)
chr7 (1-311)||(1718142-1718452)
chr7 (83-311)||(43883873-43884101)
chr7 (57-210)||(6802695-6802848)
chr7 (167-211)||(6214915-6214959)
chr7 (142-206)||(31395552-31395616)
chr7 (146-200)||(13808034-13808088)
chr7 (165-205)||(9598592-9598632)
chr7 (165-205)||(9826163-9826203)
chr7 (165-225)||(13760880-13760940)
chr7 (165-205)||(35769000-35769040)
[»] chr3 (12 HSPs)
chr3 (1-311)||(43858189-43858499)
chr3 (46-311)||(47746273-47746538)
chr3 (153-225)||(3159671-3159743)
chr3 (165-218)||(29542512-29542565)
chr3 (168-218)||(41878616-41878666)
chr3 (160-218)||(6925867-6925925)
chr3 (165-211)||(10927136-10927182)
chr3 (164-206)||(36730648-36730690)
chr3 (165-210)||(20550046-20550091)
chr3 (177-218)||(42806414-42806455)
chr3 (165-205)||(15206043-15206083)
chr3 (156-224)||(38394752-38394820)
[»] chr1 (10 HSPs)
chr1 (6-311)||(46269117-46269422)
chr1 (1-306)||(48242085-48242390)
chr1 (169-303)||(81588-81722)
chr1 (88-225)||(33568648-33568785)
chr1 (153-214)||(47671180-47671241)
chr1 (85-208)||(31403884-31404007)
chr1 (165-218)||(28442270-28442323)
chr1 (168-211)||(19579090-19579133)
chr1 (168-218)||(28400419-28400469)
chr1 (165-205)||(22157828-22157868)
[»] chr4 (6 HSPs)
chr4 (1-306)||(53480680-53480983)
chr4 (57-214)||(12376979-12377136)
chr4 (142-206)||(19497499-19497563)
chr4 (160-214)||(11131316-11131370)
chr4 (160-218)||(54870943-54871001)
chr4 (165-206)||(30566748-30566789)
[»] chr2 (3 HSPs)
chr2 (57-210)||(40368474-40368627)
chr2 (165-211)||(36400510-36400556)
chr2 (153-205)||(7447219-7447271)
[»] chr8 (6 HSPs)
chr8 (87-214)||(42452922-42453049)
chr8 (163-208)||(24788580-24788625)
chr8 (160-218)||(7179155-7179213)
chr8 (162-200)||(15864366-15864404)
chr8 (153-199)||(38246070-38246116)
chr8 (165-211)||(38921191-38921237)
[»] chr6 (11 HSPs)
chr6 (153-225)||(29071396-29071468)
chr6 (153-225)||(29103969-29104041)
chr6 (160-218)||(29321449-29321507)
chr6 (160-218)||(11298717-11298775)
chr6 (156-225)||(18780752-18780821)
chr6 (165-206)||(24395702-24395743)
chr6 (165-211)||(19248729-19248775)
chr6 (165-211)||(21605315-21605361)
chr6 (156-205)||(3862838-3862887)
chr6 (165-206)||(18970902-18970943)
chr6 (160-208)||(5667500-5667548)
[»] chr5 (2 HSPs)
chr5 (165-225)||(25352595-25352655)
chr5 (165-218)||(21041870-21041923)
[»] scaffold0011 (1 HSPs)
scaffold0011 (163-225)||(218187-218249)
[»] scaffold0074 (1 HSPs)
scaffold0074 (165-206)||(25786-25827)
[»] scaffold0259 (1 HSPs)
scaffold0259 (165-205)||(4076-4116)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 1718142 - 1718452
Alignment:
Q  1 cggagcatctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttaagtatttctttcgtttttgctggtgaacttcgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  1718142 cggagcatctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttaggtatttctttcgtatttgctggtgaacttcgaca 1718241  T
Q  101 tcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaa 200  Q
    |||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  1718242 tcactgtctccagttcactaagatggctggaatgcaacttctcactttttctttcttcagggttatttggtttgccactatttaggtgatttggaaggaa 1718341  T
Q  201 aggaataatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacattattcttttttatggttgaggtctaaacaggtgg 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1718342 aggaataatcgggtttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacgttattcttttttatggttgaggtctaaacaggtgg 1718441  T
Q  301 cttttgattat 311  Q
    |||||||||||    
T  1718442 cttttgattat 1718452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 83 - 311
Target Start/End: Complemental strand, 43884101 - 43883873
Alignment:
Q  83 tgctggtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatt 182  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || | ||||||||||||||||||||||    
T  43884101 tgctggtgaaattcgacaacactgtttccagttcactaagatggcgggaatgcctcttctcacttattctttttttagggttatttggtttgccactatt 43884002  T
Q  183 tgggtgatttggaaggaaaggaataatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacattattcttttttatggt 282  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||| |||||||| || |||| ||  |||||||||||||    
T  43884001 tgggtgatttggaaggaaaggaataatcgggtttttcaaaataccggttctgaacctttcaacctcatagaaatcgtaaaacgtttatcttttttatggt 43883902  T
Q  283 tgaggtctaaacaggtggcttttgattat 311  Q
    |||||||||||||||||||||||| ||||    
T  43883901 tgaggtctaaacaggtggcttttgcttat 43883873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 6802695 - 6802848
Alignment:
Q  57 aattggttaagtatttctttcgtttttgctggtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcacttattctttct 156  Q
    ||||||||| | ||||| || ||  ||| |||||| ||||||||||||| ||| ||||||||||||||||| || |||||  ||    || |||  ||||    
T  6802695 aattggttaggcatttcgtttgtgcttgatggtgagcttcgacatcactttctgcagttcactaagatggcgggtatgccaatttattctcatttattct 6802794  T
Q  157 tcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatc 210  Q
    ||| | |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  6802795 tcacgattatttggtttgtcactatttgggtgatttggaaggaaaggaacaatc 6802848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 6214959 - 6214915
Alignment:
Q  167 ttggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    |||||||||| || |||||||| ||||||||||||||||||||||    
T  6214959 ttggtttgcctctgtttgggtgctttggaaggaaaggaataatcg 6214915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 31395616 - 31395552
Alignment:
Q  142 tcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||| |||| |||||||  || |||||||||||| |||||||||| |||| |||||||||||||    
T  31395616 tcactcattcattcttcacagtcatttggtttgcctctatttgggttatttagaaggaaaggaat 31395552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 13808088 - 13808034
Alignment:
Q  146 ttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaa 200  Q
    |||||| ||||||| | ||||||||||||| ||| ||||| ||||||||||||||    
T  13808088 ttattcattcttcaggattatttggtttgcaactgtttggatgatttggaaggaa 13808034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 9598592 - 9598632
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  9598592 atttggtttgcatctgtttgggtgatttggaaggaaaggaa 9598632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 9826163 - 9826203
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  9826163 atttggtttgcatctgtttgggtgatttggaaggaaaggaa 9826203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 13760880 - 13760940
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    ||||||||||| ||| |||||||||| || |||||||||||||| ||  | ||||||||||    
T  13760880 atttggtttgctactgtttgggtgatatgaaaggaaaggaataaccgtgtctttcaaaata 13760940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 35769040 - 35769000
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    ||||||||||| ||||||||| |||||||||| ||||||||    
T  35769040 atttggtttgcaactatttggatgatttggaaagaaaggaa 35769000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 43858499 - 43858189
Alignment:
Q  1 cggagcatctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttaagtatttctttcgtttttgctggtgaacttcgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |  |||||||||||||||||    
T  43858499 cggagcatctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttgggtatttctttcgtatacgctggtgaacttcgaca 43858400  T
Q  101 tcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaa 200  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  43858399 tcactgtctccagttcactaagatggccggaatgccacttctcacatattcttttttcagggttatttggtttgccactatttgggtgatttggaaggaa 43858300  T
Q  201 aggaataatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacattattcttttttatggttgaggtctaaacaggtgg 300  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43858299 aggaataatcgggtttttcaaaataccggttccgaacttttcaacctcatagaaatagttaaacgttattcttttttatggttgaggtctaaacaggtgg 43858200  T
Q  301 cttttgattat 311  Q
    |||||| ||||    
T  43858199 cttttgcttat 43858189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 46 - 311
Target Start/End: Complemental strand, 47746538 - 47746273
Alignment:
Q  46 ctcttgtaagcaattggttaagtatttctttcgtttttgctggtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcac 145  Q
    |||||||  ||||||||||| |||||| ||| ||   |||||||||||||||||| |||||| | ||||||||||||||||| ||||||||| || | ||    
T  47746538 ctcttgtctgcaattggttaggtatttgttttgtgcatgctggtgaacttcgacaacactgtattcagttcactaagatggcgggaatgcctctttttac 47746439  T
Q  146 ttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaataacggttccgaacttttcaac 245  Q
    | | |  |  |||| | ||||||||||||||||| ||| ||||||||||||||||| |||||||||  |||| ||||||| || ||||||   | | |||    
T  47746438 tcagttatatttcaggattatttggtttgccactgtttaggtgatttggaaggaaatgaataatcgagttttgcaaaataccgcttccgatactataaac 47746339  T
Q  246 cttatagaaatagttaaacattattcttttttatggttgaggtctaaacaggtggcttttgattat 311  Q
    || ||||||||| | || | | |||||   |||||||||||||||||||| ||| |||||| ||||    
T  47746338 ctcatagaaataataaagcgtaattctcacttatggttgaggtctaaacacgtgacttttgcttat 47746273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 3159743 - 3159671
Alignment:
Q  153 ttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||    
T  3159743 ttcttcaggattatttggtttgccactatttgggtgctttggaaggaaaggaataaccgggtatttcaaaata 3159671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 29542565 - 29542512
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||    
T  29542565 atttggtttgcgactatgtgggagatttggaaggaaaggaataataggattttt 29542512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 41878616 - 41878666
Alignment:
Q  168 tggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    |||||||| ||||| |||| |||||||||||||||||||||| ||||||||    
T  41878616 tggtttgcgactatgtgggagatttggaaggaaaggaataataggattttt 41878666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 6925867 - 6925925
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    |||| ||||||||||| || || |||| ||||||||||||||| |||||| ||||||||    
T  6925867 aggtgatttggtttgcaacaatgtgggagatttggaaggaaagaaataataggattttt 6925925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 10927136 - 10927182
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    ||||| ||||| ||| ||||||||||||||||||| |||||||||||    
T  10927136 atttgatttgcaactgtttgggtgatttggaaggagaggaataatcg 10927182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 36730690 - 36730648
Alignment:
Q  164 tatttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||||||||||| ||||||||||||||||||| || ||||||    
T  36730690 tatttggtttgcctctatttgggtgatttggaaagagaggaat 36730648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 20550046 - 20550091
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatc 210  Q
    ||||||||||| |||||||||||||| ||||||||  |||||||||    
T  20550046 atttggtttgcaactatttgggtgatatggaaggaggggaataatc 20550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 42806455 - 42806414
Alignment:
Q  177 actatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    ||||| |||| |||||||||||||||||||||| ||||||||    
T  42806455 actatgtgggagatttggaaggaaaggaataataggattttt 42806414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 15206043 - 15206083
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  15206043 atttggtttgcatctgtttgggtgatttggaaggaaaggaa 15206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 38394752 - 38394820
Alignment:
Q  156 ttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaat 224  Q
    |||||| ||||||||||||  ||||||||| |  |||||||||||||||| | |||| | |||||||||    
T  38394752 ttcaagattatttggtttgttactatttggatcctttggaaggaaaggaacagtcgggtatttcaaaat 38394820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 46269422 - 46269117
Alignment:
Q  6 catctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttaagtatttctttcgtttttgctggtgaacttcgacatcact 105  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||    
T  46269422 catctttttcttcattgttcaatggctggttatttgtgggctattgtaagcaattagttatgtatttctttcgtatatgctggtgaacttcgacatcact 46269323  T
Q  106 gtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
     ||||| ||||||||||||||| ||||||||  ||| ||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  46269322 ttctccggttcactaagatggccggaatgccacttcacacatattcttttttcagggttatttggtttaccactatttgggtgatttggaaggaaaggaa 46269223  T
Q  206 taatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacattattcttttttatggttgaggtctaaacaggtggctttt 305  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  46269222 taatcgggtttttcaaaataccggttccgaacttttcaacctcatagaaatagttaaacgttattcttttttatggttgagatctaaacaggtggctttt 46269123  T
Q  306 gattat 311  Q
    | ||||    
T  46269122 gcttat 46269117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 48242085 - 48242390
Alignment:
Q  1 cggagcatctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttaagtatttctttcgtttttgctggtgaacttcgaca 100  Q
    |||||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||| |||||||||| || | |||||||||| |||||||    
T  48242085 cggagcgtctttttctgcattgttctatggctggtattttgtgggctcttgtaagcaattggttaggtatttcttttgtgtatgctggtgaaattcgaca 48242184  T
Q  101 tcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaa 200  Q
     |||||| | ||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  48242185 acactgttttcagttcactaagatggcgggaatgcctcttctcacttattcttttttcagggttatttggtttgccactatttgggtgatttggaaggaa 48242284  T
Q  201 aggaataatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacattattcttttttatggttgaggtctaaacaggtgg 300  Q
    | ||||||||   |||||||||||| |||||| |||  ||||||||| ||||||||||| |||| ||  ||||||||||||||||||||||||||  |||    
T  48242285 aagaataatcatgtttttcaaaataccggttctgaatctttcaacctcatagaaatagtaaaacgtttatcttttttatggttgaggtctaaacatatgg 48242384  T
Q  301 cttttg 306  Q
    ||||||    
T  48242385 cttttg 48242390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 81722 - 81588
Alignment:
Q  169 ggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacatta 268  Q
    |||||||||||||||||  ||| || ||||||||||||| |||| |||| ||||||| ||  || || | ||| ||||| || |||||||| ||  || |    
T  81722 ggtttgccactatttggacgatatgcaaggaaaggaatactcgggttttccaaaataccgtgtctgatcctttaaacctcatcgaaatagtaaagtataa 81623  T
Q  269 ttcttttttatggttgaggtctaaacaggtggctt 303  Q
    |||||  ||||||||||||||||||||||||||||    
T  81622 ttcttacttatggttgaggtctaaacaggtggctt 81588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 33568785 - 33568648
Alignment:
Q  88 gtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttgggt 187  Q
    |||| |||||| |||||| | | ||||||||||||||||| ||||||||| ||    || | ||||  |||| | ||||||||||||||||  |||||||    
T  33568785 gtgagcttcgatatcactttattcagttcactaagatggcgggaatgcctatttattctcactcttatttcaggattatttggtttgccacagtttgggt 33568686  T
Q  188 gatttggaaggaaaggaataatcggatttttcaaaata 225  Q
     ||||||||||| |||||||| || || ||||||||||    
T  33568685 catttggaaggataggaataaccgaatatttcaaaata 33568648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 47671180 - 47671241
Alignment:
Q  153 ttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggat 214  Q
    ||||||| | ||||||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  47671180 ttcttcacgattatttgatttgtcactatttgggtgatttggaaggaaaggaacaatcggat 47671241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 31403884 - 31404007
Alignment:
Q  85 ctggtgaacttcgacatcactgtctccagttcactaagatggctggaatgcct--tttctcacttattctttcttcaaggttatttggtttgccactatt 182  Q
    ||||||| ||||||||||| | | | |||||||||| |||||| |||||||||  ||| | ||  |||||||||||| | | ||||||||||| ||  ||    
T  31403884 ctggtgagcttcgacatcattttattcagttcactatgatggcgggaatgcctcgttttttac--attctttcttcaggataatttggtttgcaaccgtt 31403981  T
Q  183 tgggtgatttggaaggaaaggaataa 208  Q
    ||| ||||||||||||| ||||||||    
T  31403982 tggatgatttggaaggataggaataa 31404007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 28442323 - 28442270
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||  |||||||    
T  28442323 atttggtttgcgactatgtgggagatttggaaggaaaggaataatatgattttt 28442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 19579133 - 19579090
Alignment:
Q  168 tggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    |||||||| |||||||||||||||||||||||| | ||||||||    
T  19579133 tggtttgctactatttgggtgatttggaaggaacgaaataatcg 19579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 28400419 - 28400469
Alignment:
Q  168 tggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    ||||| || ||||| |||| |||||||||||||||||||||| ||||||||    
T  28400419 tggttcgcgactatgtgggagatttggaaggaaaggaataataggattttt 28400469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 22157868 - 22157828
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  22157868 atttggtttgcatctgtttgggtgatttggaaggaaaggaa 22157828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 53480983 - 53480680
Alignment:
Q  1 cggagcatctttttcttcattgttcaatggctggttatttgtgggctcttgtaagcaattggttaagtatttctttcgtttttgctggtgaacttcgaca 100  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||||   ||||||||||||||||||    
T  53480983 cggagcatctttttcttcattgttctatggctggttatctgtgggctcttataagcaattggttaggtatttctttcgtgcatgctggtgaacttcgaca 53480884  T
Q  101 tcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaa 200  Q
      |||||||||| |||||||||||||| | ||||||  ||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  53480883 atactgtctccaattcactaagatggcggaaatgccacttctcacatattattttttcagggttatttggtttgccactatttgggtgatttggaaggaa 53480784  T
Q  201 aggaataatcggatttttcaaaataacggttccgaacttttcaaccttatagaaatagttaaacattattcttttttatggttgaggtctaaacaggtgg 300  Q
    ||||||||| || ||||   ||||| |||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  53480783 aggaataattgggtttt--caaataccggtaccgaacttttcaacctcatagaaattgtaaaacattattcttttttatggttgaggtctaaacaggtgg 53480686  T
Q  301 cttttg 306  Q
    ||||||    
T  53480685 cttttg 53480680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 12377136 - 12376979
Alignment:
Q  57 aattggttaagtatttctttcgtttttgctggtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcacttattctttct 156  Q
    ||||||||| | ||||| || ||  ||| |||||| ||||||||||||| | | ||||||||||||||||| || |||||  ||    || |||  ||||    
T  12377136 aattggttaggcatttcgtttgtgcttgatggtgagcttcgacatcactttttgcagttcactaagatggcgggtatgccaatttattctcatttattct 12377037  T
Q  157 tcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggat 214  Q
    ||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  12377036 tcacgattatttggtttgtcactatttgggtgatttggaaggaaaggaacaatcggat 12376979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 19497563 - 19497499
Alignment:
Q  142 tcacttattctttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||| |||| |||||||  || |||||||||||| |||||||||| ||||||||||||||||||    
T  19497563 tcactcattcattcttcacagtcatttggtttgcctctatttgggttatttggaaggaaaggaat 19497499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 11131370 - 11131316
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggat 214  Q
    |||| ||||||||||| ||||| |||| |||||||||||||||||||||| ||||    
T  11131370 aggtgatttggtttgcgactatgtgggagatttggaaggaaaggaataataggat 11131316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 54871001 - 54870943
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    |||| ||||||||||| || || |||| ||||||||||||||| |||||| ||||||||    
T  54871001 aggtgatttggtttgcaacaatgtgggagatttggaaggaaagaaataataggattttt 54870943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 30566789 - 30566748
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  30566789 atttggtttgctactatttgggtaatttgaaaggaaaggaat 30566748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 40368627 - 40368474
Alignment:
Q  57 aattggttaagtatttctttcgtttttgctggtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcacttattctttct 156  Q
    ||||||||| | ||||| || ||  ||| |||||| ||||||||||||| ||| ||||||||||||||||| || |||||  ||    || |||  ||||    
T  40368627 aattggttaggcatttcgtttgtgcttgatggtgagcttcgacatcactttcttcagttcactaagatggcaggtatgccaatttattctcatttattct 40368528  T
Q  157 tcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatc 210  Q
    ||| | |||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  40368527 tcacgattatttggtttgtcactatttgggtgatttggaaggaaatgaacaatc 40368474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 36400556 - 36400510
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    ||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  36400556 atttggtttgcaactgtttgggtgatatggaaggagaggaataatcg 36400510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 7447271 - 7447219
Alignment:
Q  153 ttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    ||||| ||| ||||||| ||||  | |||||||||||||||||||||||||||    
T  7447271 ttctttaagattatttgatttgttaatatttgggtgatttggaaggaaaggaa 7447219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 42452922 - 42453049
Alignment:
Q  87 ggtgaacttcgacatcactgtctccagttcactaagatggctggaatgccttttctcacttattctttcttcaaggttatttggtttgccactatttggg 186  Q
    ||||| ||||||||||||| ||  ||||| ||||||||||| || |||||  ||    || |||  ||||||| | |||||||||||| |||||||||||    
T  42452922 ggtgagcttcgacatcactttcaacagtttactaagatggcgggtatgccaatttattctcatttattcttcacgattatttggtttgtcactatttggg 42453021  T
Q  187 tgatttggaaggaaaggaataatcggat 214  Q
    ||||||||||||||| ||| ||||||||    
T  42453022 tgatttggaaggaaatgaacaatcggat 42453049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 24788625 - 24788580
Alignment:
Q  163 ttatttggtttgccactatttgggtgatttggaaggaaaggaataa 208  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  24788625 ttatttggtttgcaactgtttgggtgatttggaaggagaggaataa 24788580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 7179213 - 7179155
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    |||| ||||||||||| || || | || |||||||||||||||||||||| ||||||||    
T  7179213 aggtgatttggtttgcgacaatgtaggagatttggaaggaaaggaataataggattttt 7179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 15864366 - 15864404
Alignment:
Q  162 gttatttggtttgccactatttgggtgatttggaaggaa 200  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  15864366 gttatttggtttgctactatttgggtgacttggaaggaa 15864404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 38246116 - 38246070
Alignment:
Q  153 ttcttcaaggttatttggtttgccactatttgggtgatttggaagga 199  Q
    ||||||||| ||||||||||||| | || ||||||||||||||||||    
T  38246116 ttcttcaagattatttggtttgcaattaattgggtgatttggaagga 38246070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 38921237 - 38921191
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    ||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  38921237 atttggtttgcaactgtttgggtcatttggaaggagaggaataatcg 38921191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 29071468 - 29071396
Alignment:
Q  153 ttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    ||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||| | | |||| |||||||    
T  29071468 ttcttcaggattatttgatttgccactatttgggtgctttggaaggaaaggaataaccaggttttccaaaata 29071396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 29104041 - 29103969
Alignment:
Q  153 ttcttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    ||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||| | | |||| |||||||    
T  29104041 ttcttcaggattatttgatttgccactatttgggtgctttggaaggaaaggaataaccaggttttccaaaata 29103969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 29321507 - 29321449
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    |||| ||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||    
T  29321507 aggtgatttggtttgcgactatgtgggagatttggaaggaaaggaataataggattttt 29321449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 11298775 - 11298717
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    |||| ||||||||||| ||||| |||| |||||||||||||||||||||| | ||||||    
T  11298775 aggtgatttggtttgcgactatgtgggagatttggaaggaaaggaataatagaattttt 11298717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 18780821 - 18780752
Alignment:
Q  156 ttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    |||||| ||||||||||||  | |||||||||| |||||||||| |||| ||||||| | ||||||||||    
T  18780821 ttcaagattatttggtttgtaaatatttgggtgctttggaaggataggattaatcgggtatttcaaaata 18780752  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 24395702 - 24395743
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  24395702 atttggtttgcaactgtttgggtgatttggaaggaaaggaat 24395743  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 19248775 - 19248729
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    |||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  19248775 atttggtttgcctctatttgggtgctttgaaaggaaagtaataatcg 19248729  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 21605361 - 21605315
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcg 211  Q
    |||||||||||  || ||||||||||||||||||||||||| |||||    
T  21605361 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaatcg 21605315  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 3862838 - 3862887
Alignment:
Q  156 ttcaaggttatttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    |||||| ||||||||||||  ||||||| |||| ||||||||||||||||    
T  3862838 ttcaagattatttggtttgttactatttcggtgctttggaaggaaaggaa 3862887  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 18970943 - 18970902
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||    
T  18970943 atttggtttgcaactgtttaggtgatttggaaggaaaggaat 18970902  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 5667548 - 5667500
Alignment:
Q  160 aggttatttggtttgccactatttgggtgatttggaaggaaaggaataa 208  Q
    |||||||||||||||| ||  ||||||  ||||||||||||||||||||    
T  5667548 aggttatttggtttgcaacagtttgggaaatttggaaggaaaggaataa 5667500  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 25352655 - 25352595
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    ||||||||||| | |||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  25352655 atttggtttgcaattatttgggtgctttggaagggaaggaatgatcggatttttcaaaata 25352595  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 21041870 - 21041923
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaataatcggattttt 218  Q
    ||||||||||| || || |||| ||||||||||||||| |||||| ||||||||    
T  21041870 atttggtttgcaacaatgtgggagatttggaaggaaagaaataataggattttt 21041923  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 218187 - 218249
Alignment:
Q  163 ttatttggtttgccactatttgggtgatttggaaggaaaggaataatcggatttttcaaaata 225  Q
    ||||||||||  | |||||||||| |||||||||||| |||||||| ||  ||||||||||||    
T  218187 ttatttggttatctactatttgggagatttggaaggagaggaataaccgtgtttttcaaaata 218249  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 25786 - 25827
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaat 206  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||    
T  25786 atttggtttgcaactgtttggatgatttggaaggaaaggaat 25827  T

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Target: scaffold0259 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 4076 - 4116
Alignment:
Q  165 atttggtttgccactatttgggtgatttggaaggaaaggaa 205  Q
    ||||||||||| |||||||| ||||||||||| ||||||||    
T  4076 atttggtttgcaactatttgagtgatttggaaagaaaggaa 4116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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