View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_58 (Length: 296)

Name: NF11932_low_58
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_58
NF11932_low_58
[»] chr2 (13 HSPs)
chr2 (14-292)||(15825922-15826202)
chr2 (16-245)||(1794455-1794686)
chr2 (52-246)||(27166253-27166449)
chr2 (117-246)||(22906017-22906148)
chr2 (131-246)||(9510118-9510233)
chr2 (131-246)||(18655090-18655205)
chr2 (131-246)||(45018222-45018337)
chr2 (61-242)||(24992528-24992711)
chr2 (186-246)||(22102401-22102461)
chr2 (202-239)||(29495456-29495493)
chr2 (178-242)||(22745304-22745368)
chr2 (186-242)||(22778130-22778186)
chr2 (186-242)||(28705124-28705180)
[»] scaffold0028 (2 HSPs)
scaffold0028 (18-246)||(100577-100807)
scaffold0028 (131-242)||(85296-85407)
[»] chr4 (12 HSPs)
chr4 (18-246)||(54696063-54696293)
chr4 (30-281)||(26815723-26815978)
chr4 (131-246)||(6696090-6696205)
chr4 (61-242)||(115623-115806)
chr4 (61-246)||(17155288-17155475)
chr4 (163-246)||(16268928-16269011)
chr4 (16-190)||(18127222-18127397)
chr4 (178-242)||(14009392-14009456)
chr4 (186-242)||(15874884-15874940)
chr4 (186-242)||(43250403-43250459)
chr4 (186-242)||(15200665-15200721)
chr4 (178-242)||(17243706-17243770)
[»] scaffold0010 (1 HSPs)
scaffold0010 (47-246)||(260340-260541)
[»] chr1 (11 HSPs)
chr1 (16-242)||(14278333-14278561)
chr1 (131-246)||(16158755-16158870)
chr1 (61-240)||(20174822-20175003)
chr1 (202-239)||(6857135-6857172)
chr1 (202-239)||(6863345-6863382)
chr1 (198-239)||(48200824-48200865)
chr1 (198-239)||(48209407-48209448)
chr1 (186-242)||(17718005-17718061)
chr1 (186-242)||(21128238-21128294)
chr1 (186-242)||(47611836-47611892)
chr1 (186-242)||(51649777-51649833)
[»] chr8 (15 HSPs)
chr8 (18-246)||(25047653-25047883)
chr8 (63-242)||(12919089-12919270)
chr8 (47-246)||(33598203-33598404)
chr8 (18-246)||(20747890-20748120)
chr8 (47-246)||(18236198-18236399)
chr8 (47-246)||(18245649-18245850)
chr8 (131-246)||(21209324-21209439)
chr8 (163-246)||(14888075-14888158)
chr8 (61-246)||(22834610-22834797)
chr8 (63-240)||(19754182-19754361)
chr8 (186-242)||(248732-248788)
chr8 (186-242)||(811833-811889)
chr8 (186-242)||(3839846-3839902)
chr8 (186-242)||(22669946-22670002)
chr8 (186-242)||(32081589-32081645)
[»] chr6 (16 HSPs)
chr6 (47-246)||(25897965-25898166)
chr6 (61-242)||(9007490-9007673)
chr6 (131-246)||(16901818-16901933)
chr6 (131-246)||(18163937-18164052)
chr6 (131-246)||(24928519-24928634)
chr6 (131-246)||(31360691-31360806)
chr6 (61-242)||(8998321-8998504)
chr6 (163-243)||(29563207-29563287)
chr6 (140-242)||(11377271-11377373)
chr6 (131-242)||(27747404-27747515)
chr6 (178-242)||(25774412-25774476)
chr6 (186-242)||(14057253-14057309)
chr6 (186-242)||(14063382-14063438)
chr6 (186-242)||(21126314-21126370)
chr6 (186-242)||(22811732-22811788)
chr6 (186-242)||(25680868-25680924)
[»] chr5 (19 HSPs)
chr5 (18-246)||(24416098-24416329)
chr5 (18-246)||(30450879-30451109)
chr5 (47-246)||(24296887-24297088)
chr5 (47-246)||(22454147-22454348)
chr5 (16-245)||(5604070-5604301)
chr5 (52-246)||(20951733-20951929)
chr5 (131-246)||(18383612-18383727)
chr5 (131-246)||(26198679-26198794)
chr5 (131-246)||(27416020-27416135)
chr5 (131-246)||(33943192-33943307)
chr5 (61-242)||(724826-725009)
chr5 (61-248)||(19382061-19382250)
chr5 (175-242)||(21202950-21203017)
chr5 (186-242)||(9339936-9339992)
chr5 (186-242)||(14453836-14453892)
chr5 (186-242)||(22680097-22680153)
chr5 (186-242)||(23700761-23700817)
chr5 (186-242)||(30234250-30234306)
chr5 (186-242)||(42046761-42046817)
[»] chr3 (19 HSPs)
chr3 (30-281)||(28360980-28361235)
chr3 (16-245)||(48982173-48982404)
chr3 (52-242)||(2158725-2158917)
chr3 (131-246)||(8976718-8976833)
chr3 (131-246)||(9541007-9541122)
chr3 (131-246)||(16405481-16405596)
chr3 (52-242)||(40089980-40090172)
chr3 (131-246)||(6426179-6426294)
chr3 (61-242)||(19688272-19688455)
chr3 (16-190)||(4363326-4363501)
chr3 (186-242)||(39379007-39379063)
chr3 (186-242)||(5583491-5583547)
chr3 (186-242)||(13128594-13128650)
chr3 (186-242)||(14472544-14472600)
chr3 (178-242)||(16027196-16027260)
chr3 (186-242)||(16394905-16394961)
chr3 (186-242)||(29937412-29937468)
chr3 (186-242)||(29986566-29986622)
chr3 (198-238)||(43326267-43326307)
[»] chr7 (17 HSPs)
chr7 (61-242)||(14641100-14641283)
chr7 (16-281)||(15178968-15179237)
chr7 (131-246)||(5388269-5388384)
chr7 (131-246)||(6538349-6538464)
chr7 (131-246)||(8504921-8505036)
chr7 (131-246)||(9541594-9541709)
chr7 (131-246)||(16138538-16138653)
chr7 (131-246)||(26354653-26354768)
chr7 (131-246)||(32102252-32102367)
chr7 (131-246)||(46500986-46501101)
chr7 (61-242)||(610207-610390)
chr7 (175-246)||(44901171-44901242)
chr7 (131-228)||(44901246-44901344)
chr7 (186-242)||(13663302-13663358)
chr7 (186-242)||(16552488-16552544)
chr7 (186-242)||(16613118-16613174)
chr7 (186-242)||(24741006-24741062)
[»] scaffold0313 (1 HSPs)
scaffold0313 (131-246)||(13429-13544)
[»] scaffold0254 (1 HSPs)
scaffold0254 (131-246)||(14333-14448)
[»] scaffold0003 (1 HSPs)
scaffold0003 (117-246)||(148885-149016)
[»] scaffold0163 (1 HSPs)
scaffold0163 (114-242)||(19375-19505)
[»] scaffold0059 (1 HSPs)
scaffold0059 (131-246)||(46772-46887)
[»] scaffold0049 (2 HSPs)
scaffold0049 (163-246)||(84974-85057)
scaffold0049 (140-242)||(18463-18565)
[»] scaffold0500 (1 HSPs)
scaffold0500 (48-229)||(9431-9614)
[»] scaffold0096 (1 HSPs)
scaffold0096 (61-242)||(52490-52673)
[»] scaffold0611 (1 HSPs)
scaffold0611 (163-246)||(1821-1904)
[»] scaffold0141 (1 HSPs)
scaffold0141 (163-246)||(29755-29838)
[»] scaffold0058 (1 HSPs)
scaffold0058 (199-246)||(62806-62853)
[»] scaffold0015 (1 HSPs)
scaffold0015 (186-242)||(160065-160121)
[»] scaffold0269 (1 HSPs)
scaffold0269 (186-240)||(23698-23752)
[»] scaffold0892 (1 HSPs)
scaffold0892 (186-242)||(4448-4504)
[»] scaffold0863 (1 HSPs)
scaffold0863 (186-242)||(1361-1417)
[»] scaffold0453 (1 HSPs)
scaffold0453 (186-242)||(4649-4705)
[»] scaffold0315 (1 HSPs)
scaffold0315 (186-242)||(5268-5324)
[»] scaffold0084 (1 HSPs)
scaffold0084 (194-242)||(45451-45499)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 15825922 - 15826202
Alignment:
Q  14 tgaaccaaaaatgtggaaatttgagatattagcttttctatttatc-gagagttcatatggagtattgtttacaatttttctaattgaaacacaattttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  15825922 tgaaccaaaaatgtggaaatttgagatattagcttttctatttatctgagagt-catatggagtattgtttagaatttttctaattgaaacacaattttt 15826020  T
Q  113 aatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctatttttt 210  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  15826021 aatatagcaaaatgtgtttatggcttcaacccaaaaatattttttaacattagattcattcaatattgttcttgtcatttcttgcaaagttctatttttt 15826120  T
Q  211 ctttcagcaactccattttattgtggagttcttgcatataaaattacgtgagctctctttttcatcaaagatagtcttaaat 292  Q
    ||||||| ||||||||||| |||||||||||||||||  ||||||| ||||| || ||||||||||||||||||| ||||||    
T  15826121 ctttcagtaactccattttgttgtggagttcttgcatgaaaaattatgtgagatccctttttcatcaaagatagttttaaat 15826202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 1794686 - 1794455
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    ||||||||||||| ||||  ||||| || | |||| ||||| || ||||||||||||| || ||||||| |||||||||||| || |||| |||| ||||    
T  1794686 aaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttcatatggggttttgtttaaaatttttctaatagagacacgatttataat 1794587  T
Q  116 atagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctt 213  Q
    ||||||| | || ||  |||||||| ||||||| |||||||  ||||| |||||| | |  |||||||||| ||||| |||||  ||||||||||||||     
T  1794586 atagcaagaggtatttatggcttcagcccaaaagtatttttctatatttgattcacttatcattgttcttgccatttcttgtagtgttctattttttctc 1794487  T
Q  214 tcagcaactccattttattgtggagttcttgc 245  Q
    ||| | ||||| |||| ||| || ||||||||    
T  1794486 tcaacgactccgttttgttgaggggttcttgc 1794455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 27166253 - 27166449
Alignment:
Q  52 tatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaata 149  Q
    ||||| || ||||||||||||| || || || | ||  ||||| |||||||| | |||   ||| |||||| |||||||  |||||||  ||||||||||    
T  27166253 tatttttccagagttcatatggggttttattaagaacctttcttattgaaactctattcaaaatgtagcaagatgtgttaatggcttctgcccaaaaata 27166352  T
Q  150 ttttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
     | || || ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  27166353 atcttcaacatttgattcatttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttgttgtggagttcttgca 27166449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 22906148 - 22906017
Alignment:
Q  117 tagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttcttt 214  Q
    |||||| |||||||  |||||||  |||||||||| | || || ||| |||||||| || || ||||| | ||||| |||||||||||||||||||||||    
T  22906148 tagcaagatgtgttaatggcttctgcccaaaaataatcttcaacatttgattcatttaacatggttctagccatttcttgtaaagttctattttttcttt 22906049  T
Q  215 cagcaactccattttattgtggagttcttgca 246  Q
    || |||||||||||| ||||||||||||||||    
T  22906048 caacaactccattttgttgtggagttcttgca 22906017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 9510118 - 9510233
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  9510118 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 9510217  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  9510218 ttgtggagttcttgca 9510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 18655205 - 18655090
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  18655205 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 18655106  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  18655105 ttgtggagttcttgca 18655090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 45018337 - 45018222
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  45018337 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 45018238  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  45018237 ttgtggagttcttgca 45018222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 24992711 - 24992528
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  ||||||  ||||||||||||| | ||     
T  24992711 agagttcatacggggttttgtttaaaaattttcttattgaaactctgtttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaac 24992612  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||||||||||||||||||| ||| |||||||| ||| ||||||||    
T  24992611 atttgattcatttaaaatagttcttgccatttcttgcaaagttctattttttctttcaacaaatccattttgttgaggagttct 24992528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 22102461 - 22102401
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    ||||| ||| ||| ||||||||||||||||| |||||||| ||| || |||||||||||||    
T  22102461 catttcttgcaaaattctattttttctttcaacaactccactttgttctggagttcttgca 22102401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 29495456 - 29495493
Alignment:
Q  202 ctattttttctttcagcaactccattttattgtggagt 239  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  29495456 ctattttttctttcagcaactccattttgttgaggagt 29495493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 22745368 - 22745304
Alignment:
Q  178 gttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||||| ||||| |||||||||||| || ||||||||  ||||  |||||| ||||||||||||    
T  22745368 gttcttgccatttcttgtaaagttctgttctttctttctacaaccgcattttgttgtggagttct 22745304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 22778130 - 22778186
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  22778130 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 22778186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 28705180 - 28705124
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  28705180 catttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 28705124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 100577 - 100807
Alignment:
Q  18 ccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatat 117  Q
    |||||||| || |||| |||||| |||| |||| ||||| || ||||||| ||||| || ||||||| |||||||||||||||||| |  ||| | ||||    
T  100577 ccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaatttttctaattgaaaccctgtttatgatat 100676  T
Q  118 agcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttc 215  Q
    ||||| | || |||  ||||||| ||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||||    
T  100677 agcaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctttc 100776  T
Q  216 agcaactccattttattgtggagttcttgca 246  Q
    | |||||||||||| ||||||||||||||||    
T  100777 aacaactccattttgttgtggagttcttgca 100807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 85407 - 85296
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||||||||| | || ||| |||||||| || || ||||||| ||||| ||| ||||| ||||||||||||||| ||||||||||||     
T  85407 tggcttctgcccaaaaatatttctcaacatttgattcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttg 85308  T
Q  231 ttgtggagttct 242  Q
    ||| ||||||||    
T  85307 ttgaggagttct 85296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 54696063 - 54696293
Alignment:
Q  18 ccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatat 117  Q
    |||||||| || |||| |||||| |||| |||| ||||| || ||||||| ||||| || ||||||| |||||||||||||||||| |  ||| | ||||    
T  54696063 ccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaatttttctaattgaaaccctgtttatgatat 54696162  T
Q  118 agcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttc 215  Q
    ||||| | || |||  ||||||| ||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||||    
T  54696163 agcaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctttc 54696262  T
Q  216 agcaactccattttattgtggagttcttgca 246  Q
    | |||||||||||| ||||||||||||||||    
T  54696263 aacaactccattttgttgtggagttcttgca 54696293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 26815978 - 26815723
Alignment:
Q  30 aaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgt 129  Q
    |||| |||||| |||| ||||  |||| || ||||||| ||||| || ||||||| || |||||||||||||||    ||| | ||||||||| | || |    
T  26815978 aaatatgagatgttaggttttacatttttccagagttcgtatggggttttgtttaaaacttttctaattgaaaccatgtttatgatatagcaagaagtat 26815879  T
Q  130 tt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatt 227  Q
    ||  ||||||| ||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||||| ||||||||||    
T  26815878 ttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctttcaacaactccatt 26815779  T
Q  228 ttattgtggagttcttgcatat--aaaattacgtgagctctctttttcatcaaaga 281  Q
    || |||||||||||||||||||  ||||||| | ||| |  |||||||||||||||    
T  26815778 ttgttgtggagttcttgcatatgaaaaattatgagagattcctttttcatcaaaga 26815723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 6696205 - 6696090
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  6696205 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 6696106  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  6696105 ttgtggagttcttgca 6696090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 115806 - 115623
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  ||||||  ||||||||||||| | ||     
T  115806 agagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaac 115707  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  115706 atttgattcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttct 115623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 17155475 - 17155288
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaatattttttaat 158  Q
    ||||||||||||| || ||||| | ||  ||||| |||||||| | |||   ||| || ||| |||||||  |||||||  ||||||| || | || ||     
T  17155475 agagttcatatggggttttgttaagaacctttcttattgaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaatcttcaac 17155376  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| |||||||||||| |||||||||| |||||    
T  17155375 atttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttgttgtggagttgttgca 17155288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 16269011 - 16268928
Alignment:
Q  163 gattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    |||||||| || |||||||||| ||||| ||| || ||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  16269011 gattcatttaacattgttcttgccatttcttgcaaggttctgttttttctttcaacaactccattttgttgtggagttcttgca 16268928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 18127222 - 18127397
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    ||||||||||||| |||| ||| || |||| |||||||||| || ||||||||||||  || ||||| | | ||||| |||||||| ||| |||| | ||    
T  18127222 aaccaaaaatgtgaaaatatgaaatgttaggttttctatttttccagagttcatatgaggttttgttca-attttttttaattgaatcacgatttatgat 18127320  T
Q  116 atagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattt 190  Q
    ||||||| | || ||  || |||| ||| ||||||||||||  | ||| |||||||| |  |||||||||| |||||    
T  18127321 atagcaagaagtatttatgacttctacctaaaaatatttttctacatttgattcatttatcattgttcttgccattt 18127397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 14009392 - 14009456
Alignment:
Q  178 gttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||| ||||||||||||||| ||||||||  ||| ||||||||  |||||||||||    
T  14009392 gttctagtcatttcttgtaaagttctattctttctttctacaaatccatttttctgtggagttct 14009456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 15874940 - 15874884
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| ||||||||||||    
T  15874940 catttcttgtaaagttctattctttctttctacaaccccatttttttgtggagttct 15874884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 43250403 - 43250459
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| ||||||||||||    
T  43250403 catttcttgtaaagttctattctttctttctacaaccccattttgttgtggagttct 43250459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 15200721 - 15200665
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| |||||||| ||  |||| ||||||| ||||||||||||    
T  15200721 catttcttgtaaagttctgttttttctctctacaaccccattttgttgtggagttct 15200665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 17243706 - 17243770
Alignment:
Q  178 gttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| || |||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  17243706 gttctagtaatttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 17243770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 260541 - 260340
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||| ||| || ||||||||||||| || ||||| | |||||||||||||||||| | |||| | ||||||||| || ||||  |||||||| |||||    
T  260541 ttttctgtttttccagagttcatatggggttttgttgagaatttttctaattgaaactctatttatgatatagcaagatatgttgatggcttcagcccaa 260442  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    |||||||||| ||  || |||||||| |  |||||||||| ||||| ||||| ||||| ||||||||||||| |||||||||||| ||| ||||||||||    
T  260441 aaatatttttcaacgtttgattcattaatcattgttcttgccatttcttgtagagttcgattttttctttcaacaactccattttgttgaggagttcttg 260342  T
Q  245 ca 246  Q
    ||    
T  260341 ca 260340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 14278333 - 14278561
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    ||||||||||||| ||||  || || || | |||||| ||| || |||||||||| || || ||||| | ||||||||| |||||||| | |||| ||||    
T  14278333 aaccaaaaatgtgaaaataagaaatgtttggttttctgtttttccagagttcatagggggttttgttgagaatttttctgattgaaactcgatttataat 14278432  T
Q  116 atagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctt 213  Q
    ||||||| | |||||  | |||||| ||||||||||||||| || ||| |||||||| |  |||||||||| ||||| ||||||||||| ||||||||||    
T  14278433 atagcaagaagtgttaatagcttcagcccaaaaatatttttcaacatttgattcattaatcattgttcttgccatttcttgtaaagttcgattttttctt 14278532  T
Q  214 tcagcaactccattttattgtggagttct 242  Q
    ||| |||||||||||| ||| ||||||||    
T  14278533 tcaacaactccattttgttgaggagttct 14278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 16158870 - 16158755
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  16158870 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 16158771  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  16158770 ttgtggagttcttgca 16158755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 20175003 - 20174822
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtttg--gcttcaacccaaaaatattttttaat 158  Q
    ||||||||||||| || ||||||| ||  ||||| || | ||||| |||    ||||||||| ||||||||   |||||| ||||||||||||||| ||     
T  20175003 agagttcatatggggttttgtttagaaaatttctgatagtaacacgattcagtatatagcaagatgtgtttattgcttcagcccaaaaatatttttcaac 20174904  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagtt 240  Q
    ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||||||| | || ||||||| ||| ||||||    
T  20174903 atttgattcatttaacatggttctggccatttcttgtaaagttctattttttctttcaactacaccattttgttgaggagtt 20174822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 6857135 - 6857172
Alignment:
Q  202 ctattttttctttcagcaactccattttattgtggagt 239  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  6857135 ctattttttctttcagcaactccattttgttgaggagt 6857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 6863345 - 6863382
Alignment:
Q  202 ctattttttctttcagcaactccattttattgtggagt 239  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  6863345 ctattttttctttcagcaactccattttgttgaggagt 6863382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 48200865 - 48200824
Alignment:
Q  198 agttctattttttctttcagcaactccattttattgtggagt 239  Q
    |||||||||||||||||| ||||| ||||||| |||||||||    
T  48200865 agttctattttttctttccgcaacaccattttgttgtggagt 48200824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 48209448 - 48209407
Alignment:
Q  198 agttctattttttctttcagcaactccattttattgtggagt 239  Q
    |||||||||||||||||| ||||| ||||||| |||||||||    
T  48209448 agttctattttttctttccgcaacaccattttgttgtggagt 48209407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 17718005 - 17718061
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||| |||||||  |||||||||||    
T  17718005 catttcttgtaaagttctattctttctttctacaaccccattttgctgtggagttct 17718061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 21128294 - 21128238
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  21128294 catttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 21128238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 47611892 - 47611836
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  47611892 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 47611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 51649833 - 51649777
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  51649833 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 51649777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 25047653 - 25047883
Alignment:
Q  18 ccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatat 117  Q
    ||||||||||| ||||  || || || | |||||| ||| || ||||||||||||| || ||||| | ||||||||||||||| || | |||| | ||||    
T  25047653 ccaaaaatgtgaaaataagaaatgtttggttttctgtttttccagagttcatatggggttttgttaagaatttttctaattgagactctatttatgatat 25047752  T
Q  118 agcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttc 215  Q
    ||||| |||||||  |||||||| ||||||||||||||| || ||| |||||||| |  |||||||||| ||||| ||||| ||||| ||||||||||||    
T  25047753 agcaagatgtgttgatggcttcagcccaaaaatatttttcaacatttgattcattgatcattgttcttgccatttcttgtagagttcgattttttctttc 25047852  T
Q  216 agcaactccattttattgtggagttcttgca 246  Q
    | | || ||||||| ||| ||||||||||||    
T  25047853 aaccaccccattttgttgaggagttcttgca 25047883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 12919270 - 12919089
Alignment:
Q  63 agttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatat 160  Q
    |||||||| || || ||||| | |||||||||||||||||| | |||| ||||||||||| | |||||  | |||||| ||||||||||||||| || ||    
T  12919270 agttcataaggggttttgttgagaatttttctaattgaaactcgatttataatatagcaagaagtgttaatagcttcagcccaaaaatatttttcaacat 12919171  T
Q  161 tagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    | |||||||| |  |||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||| ||||||||    
T  12919170 ttgattcattaatcattgttcttgccatttcttgtaaagttcgattttttctttcaacaactccattttgttgaggagttct 12919089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 33598203 - 33598404
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||||||| || |||| ||||| || || ||||| | ||||||||| |||||||| | ||||  |||||||||| |||||||  |||||||| |||||    
T  33598203 ttttctatttttccagagctcataaggggttttgttgagaatttttctgattgaaactctatttaaaatatagcaagatgtgttaatggcttcagcccaa 33598302  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    |||||||||| || ||| |||||||| |  |||||||||| ||||| ||||| ||||| |||||| |||||| |||||||||||| ||| ||||||||||    
T  33598303 aaatatttttcaacatttgattcattaatcattgttcttgccatttcttgtagagttcgatttttcctttcaacaactccattttgttgaggagttcttg 33598402  T
Q  245 ca 246  Q
    ||    
T  33598403 ca 33598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 20748120 - 20747890
Alignment:
Q  18 ccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatat 117  Q
    |||||||| || |||| |||||| |||| |||| ||||| || ||||||||||||| || ||||||| || |||||||||||||||    ||| | ||||    
T  20748120 ccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcatatggggttttgtttaaaaattttctaattgaaaccatgtttatgatat 20748021  T
Q  118 agcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttc 215  Q
    ||||| | || |||  | | ||||||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||||    
T  20748020 agcaagaagtatttatgccatcaacccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctttc 20747921  T
Q  216 agcaactccattttattgtggagttcttgca 246  Q
    | |||||||||||| ||||||||||||||||    
T  20747920 aacaactccattttgttgtggagttcttgca 20747890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 18236399 - 18236198
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||| ||| || ||||||||||||| || || || | |||||||||||||||||| | |||| | ||||||||| |||||||  |||||||| || ||    
T  18236399 ttttctgtttttccagagttcatatggggttttattgagaatttttctaattgaaactctatttatgatatagcaagatgtgttgatggcttcagcctaa 18236300  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    |||||||||| ||  || |||||||| |  |||||||||| ||||| ||||| ||||| ||||||||||||  |||||||||||| ||| ||||||||||    
T  18236299 aaatatttttcaacgtttgattcattaatcattgttcttgccatttcttgtagagttcgattttttctttcgacaactccattttgttgaggagttcttg 18236200  T
Q  245 ca 246  Q
    ||    
T  18236199 ca 18236198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 18245850 - 18245649
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||| ||| || ||||||||||||| || || || | |||||||||||||||||| | |||| | ||||||||| |||||||  |||||||| || ||    
T  18245850 ttttctgtttttccagagttcatatggggttttattgagaatttttctaattgaaactctatttatgatatagcaagatgtgttgatggcttcagcctaa 18245751  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    |||||||||| ||  || |||||||| |  |||||||||| ||||| ||||| ||||| ||||||||||||  |||||||||||| ||| ||||||||||    
T  18245750 aaatatttttcaacgtttgattcattaatcattgttcttgccatttcttgtagagttcgattttttctttcgacaactccattttgttgaggagttcttg 18245651  T
Q  245 ca 246  Q
    ||    
T  18245650 ca 18245649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 21209324 - 21209439
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  21209324 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 21209423  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  21209424 ttgtggagttcttgca 21209439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 14888075 - 14888158
Alignment:
Q  163 gattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14888075 gattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttgttgtggagttcttgca 14888158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 22834797 - 22834610
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaatattttttaat 158  Q
    ||||||||||||| || ||||| | ||  ||||| |||||||| | |||   ||| || ||| |||||||  |||||||  |||||||||| | |||||     
T  22834797 agagttcatatggggttttgttaagaacctttcttattgaaactctattcaaaatgtaacaatatgtgttaatggcttctgcccaaaaataatctttaac 22834698  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
     || |||||||| || |||||||| | ||||| ||| || ||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  22834697 gtttgattcatttaacattgttctagccatttcttgcaaggttctatttttcctttcaacaactccattttgttgtggagttcttgca 22834610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 19754361 - 19754182
Alignment:
Q  63 agttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaatat 160  Q
    |||||||| || || ||||||| || |||||| ||||| || | ||||  |||||||||| |||| |||  ||||||  |||| |||||||| | || ||    
T  19754361 agttcatacggggttttgtttaaaacttttcttattgagactctatttaaaatatagcaagatgtatttatggcttccgcccataaatatttctcaacat 19754262  T
Q  161 tagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagtt 240  Q
    | ||||| || || || ||||||||||| | ||| ||||||||||||||||||||  ||||||| |||| ||| ||||||    
T  19754261 tggattcgtttaaaatagttcttgtcatctcttgcaaagttctattttttctttctacaactccgttttgttgaggagtt 19754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 248732 - 248788
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  248732 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 248788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 811833 - 811889
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  811833 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 811889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 3839846 - 3839902
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  3839846 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 3839902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 22669946 - 22670002
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  ||| |||||||| ||||||||||||    
T  22669946 catttcttgtaaagttctattctttctctctacaagtccattttgttgtggagttct 22670002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 32081645 - 32081589
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  32081645 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 32081589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 25898166 - 25897965
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||| ||| || ||||||||||||| || || || | || ||||||||||||||| | |||| | ||||||||| |||||||  |||||||| |||||    
T  25898166 ttttctgtttttccagagttcatatggggttttattgagaaattttctaattgaaactctatttatgatatagcaagatgtgttgatggcttcagcccaa 25898067  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    |||||||||| ||  || |||||||| |  |||||||||| ||||| ||||| ||||| ||||||||||||| |||||||||||| ||| ||||||||||    
T  25898066 aaatatttttcaacgtttgattcattaatcattgttcttgccatttcttgtagagttcgattttttctttcaacaactccattttgttgaggagttcttg 25897967  T
Q  245 ca 246  Q
    ||    
T  25897966 ca 25897965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 9007673 - 9007490
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| | ||||  ||| |||||| |||| |||  ||||||  ||||||||||||| | ||     
T  9007673 agagttcatacggggttttgtttaaaacttttcttattgaaactctatttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaac 9007574  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  9007573 atttgattcatttaaaatagttcttgccatttcttgcaaagttctattttttctttcaacaactccattttgttgaggagttct 9007490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 16901933 - 16901818
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  16901933 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 16901834  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  16901833 ttgtggagttcttgca 16901818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 18164052 - 18163937
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  18164052 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 18163953  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  18163952 ttgtggagttcttgca 18163937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 24928519 - 24928634
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  24928519 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 24928618  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  24928619 ttgtggagttcttgca 24928634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 31360806 - 31360691
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  31360806 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 31360707  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  31360706 ttgtggagttcttgca 31360691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 8998504 - 8998321
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  ||||||  ||||||||||||| | ||     
T  8998504 agagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaac 8998405  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  8998404 atttgattcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttct 8998321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 29563287 - 29563207
Alignment:
Q  163 gattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttctt 243  Q
    |||||||| || |||||||||| ||||| ||| || ||||||||||| |||||| |||||||||||| |||||||||||||    
T  29563287 gattcatttaacattgttcttgccatttcttgcaaggttctatttttcctttcaacaactccattttgttgtggagttctt 29563207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 11377373 - 11377271
Alignment:
Q  140 cccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagt 239  Q
    |||||||||| ||||||| ||| |||||||| || || ||||||| ||||| |||||| || ||||||||||||||  |||| ||||||| ||| || ||    
T  11377373 cccaaaaatactttttaacatttgattcatttaaaatagttcttgccatttcttgtaatgtcctattttttctttctacaacaccattttgttgaggcgt 11377274  T
Q  240 tct 242  Q
    |||    
T  11377273 tct 11377271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 27747404 - 27747515
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||||||||||| || ||| || ||||| || || ||||||| ||||| |||||| || ||||||||||||||  |||| |||||||     
T  27747404 tggcttctgcccaaaaatatttttcaacatttgactcatttaagatagttcttgccatttcttgtaatgtcctattttttctttctacaacaccattttg 27747503  T
Q  231 ttgtggagttct 242  Q
    ||| || |||||    
T  27747504 ttgaggtgttct 27747515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 25774476 - 25774412
Alignment:
Q  178 gttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  25774476 gttctagtcatttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 25774412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 14057309 - 14057253
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| ||| ||||||||    
T  14057309 catttcttgtaaagttctattctttctttctacaaccccattttgttgaggagttct 14057253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 14063438 - 14063382
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| ||| ||||||||    
T  14063438 catttcttgtaaagttctattctttctttctacaaccccattttgttgaggagttct 14063382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 21126314 - 21126370
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  ||||  |||||| ||||||||||||    
T  21126314 catttcttgtaaagttctattctttctttctacaacctcattttgttgtggagttct 21126370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 22811732 - 22811788
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  22811732 catttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 22811788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 25680924 - 25680868
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  25680924 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 25680868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 24416329 - 24416098
Alignment:
Q  18 ccaaaaatgtggaaatttgagatattagcttttctatttatcg-agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaata 116  Q
    |||||||| || |||| |||||| |||| |||| ||||| ||  ||||||| |||||||| ||||||| || ||||||||||||||| |  ||| | |||    
T  24416329 ccaaaaatatgaaaatatgagatgttaggttttatatttttcctagagttcgtatggagttttgtttaaaacttttctaattgaaaccctgtttatgata 24416230  T
Q  117 tagcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttcttt 214  Q
    |||||| | || |||  ||||||| ||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  ||||||||||||||||    
T  24416229 tagcaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttcttt 24416130  T
Q  215 cagcaactccattttattgtggagttcttgca 246  Q
    || |||||||||||| ||||||||||||||||    
T  24416129 caacaactccattttgttgtggagttcttgca 24416098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 30450879 - 30451109
Alignment:
Q  18 ccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatat 117  Q
    |||||||| || |||| |||||| |||| |||| ||||| || ||||||| ||||| || ||||||| || ||||||||||||||| |  ||| | ||||    
T  30450879 ccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaacttttctaattgaaaccctgtttatgatat 30450978  T
Q  118 agcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttc 215  Q
    | ||| | || |||  ||||||| ||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||||    
T  30450979 aacaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctttc 30451078  T
Q  216 agcaactccattttattgtggagttcttgca 246  Q
    | |||||||||||| ||||||||||||||||    
T  30451079 aacaactccattttgttgtggagttcttgca 30451109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 24296887 - 24297088
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||| ||| || ||||||||||||| || || || | |||||||||||||||||| | |||| | ||||||||| |||||||  |||||||| || ||    
T  24296887 ttttctgtttttccagagttcatatggggttttattgagaatttttctaattgaaactctatttatgatatagcaagatgtgttgatggcttcagcctaa 24296986  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    |||||||||| ||  || |||||||| |  |||||||||| ||||| ||||| ||||| ||||||||||||  |||||||||||| ||| ||||||||||    
T  24296987 aaatatttttcaacgtttgattcattaatcattgttcttgccatttcttgtagagttcgattttttctttcgacaactccattttgttgaggagttcttg 24297086  T
Q  245 ca 246  Q
    ||    
T  24297087 ca 24297088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 22454147 - 22454348
Alignment:
Q  47 ttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaa 144  Q
    |||||||||| || |||| ||||| || || ||||| | ||||||||| |||||||| | ||||  |||||||||| |||||||  |||||||| || ||    
T  22454147 ttttctatttttccagagctcataaggggttttgttgagaatttttctgattgaaactcgatttaaaatatagcaagatgtgttaatggcttcagccaaa 22454246  T
Q  145 aaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttg 244  Q
    ||||||||||  | ||| |||||||| |  |||||||||| | ||| ||||| ||||| ||||||||||||| |||||||||||| ||| ||||||||||    
T  22454247 aaatatttttccacatttgattcattaatcattgttcttgccctttcttgtagagttcaattttttctttcaacaactccattttgttgaggagttcttg 22454346  T
Q  245 ca 246  Q
    ||    
T  22454347 ca 22454348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 5604301 - 5604070
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    ||||||||||||| ||||  ||||| || | |||| ||||| || ||||||||||||| || ||||||| |||||||||||| || |||| |||| ||||    
T  5604301 aaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttcatatggggttttgtttaaaatttttctaatagagacacgatttataat 5604202  T
Q  116 atagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctt 213  Q
    ||||||| | || ||  |||||||| ||||||| |||||||  | ||| |||||||| |  |||||||||| ||||| |||||  ||||||||||||||     
T  5604201 atagcaagaggtatttatggcttcagcccaaaagtatttttctacatttgattcatttatcattgttcttgccatttcttgtagtgttctattttttctc 5604102  T
Q  214 tcagcaactccattttattgtggagttcttgc 245  Q
    ||| | ||||| |||| ||| || ||||||||    
T  5604101 tcaacgactccgttttgttgaggggttcttgc 5604070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 20951929 - 20951733
Alignment:
Q  52 tatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaata 149  Q
    ||||| || ||||||||||||| || || || | ||  ||||| |||||||| | |||   ||| |||||| |||||||  |||||||  ||||||||||    
T  20951929 tatttttccagagttcatatggggttttattgagaacctttcttattgaaactctattcaaaatgtagcaagatgtgttaatggcttctgcccaaaaata 20951830  T
Q  150 ttttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
     | || || ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  20951829 atcttcaacatttgattcatttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttgttgtggagttcttgca 20951733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 18383727 - 18383612
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  18383727 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 18383628  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  18383627 ttgtggagttcttgca 18383612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 26198679 - 26198794
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  26198679 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 26198778  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  26198779 ttgtggagttcttgca 26198794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 27416135 - 27416020
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  27416135 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 27416036  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  27416035 ttgtggagttcttgca 27416020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 33943307 - 33943192
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  33943307 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 33943208  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  33943207 ttgtggagttcttgca 33943192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 724826 - 725009
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  ||||||  ||||||||||||| | ||     
T  724826 agagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaac 724925  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  724926 atttgattcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttct 725009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 19382061 - 19382250
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaatattttttaat 158  Q
    |||||||||||||||| ||||| | ||| ||||| |||||||| | |||   ||| || ||| |||| ||  |||||||  || |||| || | || ||     
T  19382061 agagttcatatggagttttgttaagaatctttcttattgaaactctattcaaaatgtaacaagatgtattaatggcttccgccgaaaagtaatcttcaac 19382160  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgcata 248  Q
    ||| |||||||| || |||||||||| ||||| ||| || ||||||||||| |||||| |||||||||||| |||| |||||||| ||||    
T  19382161 atttgattcatttaacattgttcttgccatttcttgcaaggttctatttttcctttcaacaactccattttgttgtagagttcttacata 19382250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 21203017 - 21202950
Alignment:
Q  175 attgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    |||||||| | ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  21203017 attgttctagccatttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 21202950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 9339992 - 9339936
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  9339992 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 9339936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 14453836 - 14453892
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  14453836 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 14453892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 22680153 - 22680097
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  22680153 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 22680097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23700817 - 23700761
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  23700817 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 23700761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 30234250 - 30234306
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  30234250 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 30234306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 42046817 - 42046761
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  42046817 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 42046761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 28360980 - 28361235
Alignment:
Q  30 aaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgt 129  Q
    |||| |||||| |||| ||||  |||| || ||||||| ||||| || ||||||| || ||||||||||||||| |  ||| | ||||||||| | || |    
T  28360980 aaatatgagatgttaggttttacatttttccagagttcgtatggggttttgtttaaaacttttctaattgaaaccctgtttatgatatagcaagaagtat 28361079  T
Q  130 tt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatt 227  Q
    ||  ||||||| ||||||| |||||||  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||||| ||||||||||    
T  28361080 ttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctttcaacaactccatt 28361179  T
Q  228 ttattgtggagttcttgcatat--aaaattacgtgagctctctttttcatcaaaga 281  Q
    || |||||||||||||||| ||  ||||||| | ||| |  |||||||||||||||    
T  28361180 ttgttgtggagttcttgcacatgaaaaattatgagagattcctttttcatcaaaga 28361235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 48982404 - 48982173
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    ||||||||||||| ||||  ||||| || | |||| ||||| || ||||||||||||| || ||||||| |||||||||||| || |||| |||| ||||    
T  48982404 aaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttcatatggggttttgtttaaaatttttctaatagagacacgatttataat 48982305  T
Q  116 atagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctt 213  Q
    ||||||| | || ||  |||||||| ||||||| |||||||  ||||| |||||| | |  |||||||||| ||||| |||||  ||||||||||||||     
T  48982304 atagcaagaggtatttatggcttcagcccaaaagtatttttctatatttgattcacttatcattgttcttgccatttcttgtagtgttctattttttctc 48982205  T
Q  214 tcagcaactccattttattgtggagttcttgc 245  Q
    ||| | ||||| |||| ||| || ||||||||    
T  48982204 tcaacgactccgttttgttgaggggttcttgc 48982173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 2158917 - 2158725
Alignment:
Q  52 tatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtttg--gcttcaacccaaaaata 149  Q
    ||||| || ||||||||||||| || ||||||| ||  ||||| || | ||||| |||   |||||||||| ||||||||   |||||| ||||||||||    
T  2158917 tatttttccagagttcatatggggttttgtttagaaaatttctgatagtaacacgattcagaatatagcaagatgtgtttattgcttcagcccaaaaata 2158818  T
Q  150 ttttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| || ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||||||| | || ||||||| ||| ||||||||    
T  2158817 tttttcaacatttgattcatttaacatggttctggccatttcttgtaaagttctattttttctttcaactacaccattttgttgaggagttct 2158725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 8976833 - 8976718
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  8976833 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 8976734  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  8976733 ttgtggagttcttgca 8976718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 9541122 - 9541007
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  9541122 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 9541023  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  9541022 ttgtggagttcttgca 9541007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 16405596 - 16405481
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  16405596 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 16405497  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  16405496 ttgtggagttcttgca 16405481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 40089980 - 40090172
Alignment:
Q  52 tatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtttg--gcttcaacccaaaaata 149  Q
    ||||| || ||||||||||||| || ||||||| ||  ||||| || | ||||| |||    ||||||||| ||||||||   |||||| ||||||||||    
T  40089980 tatttttccagagttcatatggggttttgtttagaaaatttctgatagtaacacgattcaggatatagcaagatgtgtttattgcttcagcccaaaaata 40090079  T
Q  150 ttttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| || ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||||||| | || ||||||| ||| ||||||||    
T  40090080 tttttcaacatttgattcatttaacatggttctggccatttcttgtaaagttctattttttctttcaactacaccattttgttgaggagttct 40090172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 6426294 - 6426179
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||| ||||||     
T  6426294 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactacattttg 6426195  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  6426194 ttgtggagttcttgca 6426179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 19688455 - 19688272
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  | ||||  |||| |||||||| | ||     
T  19688455 agagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatgacttctgcccacaaatatttctcaac 19688356  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||||||||||||||| ||| |||||||||||| ||| ||||||||    
T  19688355 atttgattcatttaaaatagttcttgccatttcttgcaaagttctattttttctatcaacaactccattttgttgaggagttct 19688272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 4363326 - 4363501
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    ||||||||||||| |||| ||| || |||| |||||||||| || ||||||||||||  || ||||| | | ||||| |||||||| ||| |||| | ||    
T  4363326 aaccaaaaatgtgaaaatatgaaatgttaggttttctatttttccagagttcatatgaggttttgttca-attttttttaattgaatcacgatttatgat 4363424  T
Q  116 atagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattt 190  Q
    ||||||| | || ||  || |||| ||| ||||||||||||  | ||| |||||||| |  |||||||||| |||||    
T  4363425 atagcaagaagtatttatgacttctacctaaaaatatttttctacatttgattcatttatcattgttcttgccattt 4363501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 39379007 - 39379063
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| |||||||| ||  |||||||||||| ||||||||||||    
T  39379007 catttcttgtaaagttctgttttttctctctacaactccattttgttgtggagttct 39379063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 5583547 - 5583491
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  5583547 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 5583491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 13128594 - 13128650
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  13128594 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 13128650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 14472544 - 14472600
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  14472544 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 14472600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 16027196 - 16027260
Alignment:
Q  178 gttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||||| |||||  ||||||||| |||||||||||||  |||| |||||||  |||||||||||    
T  16027196 gttcttgccatttcctgtaaagttttattttttctttctacaaccccattttgctgtggagttct 16027260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 16394961 - 16394905
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||| ||  |||||||||||| ||||||||||||    
T  16394961 catttcttgtaaagttctgttctttctctctacaactccattttgttgtggagttct 16394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 29937468 - 29937412
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  29937468 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 29937412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 29986622 - 29986566
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  29986622 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 29986566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 43326267 - 43326307
Alignment:
Q  198 agttctattttttctttcagcaactccattttattgtggag 238  Q
    |||||||||||||||||| ||||| ||||||| ||||||||    
T  43326267 agttctattttttctttccgcaacaccattttgttgtggag 43326307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 14641100 - 14641283
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgtt--tggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| ||||| ||||| | |||||||||||| ||||| | |||| ||||||||||| | |||||  | |||||| ||||||||||||||| ||     
T  14641100 agagttcataaggagttttgttgagaatttttctaatagaaactcgatttataatatagcaagaagtgttaatagcttcagcccaaaaatatttttcaac 14641199  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| |  |||||||||| ||||| ||||||||| | |||||| |||||| |||||||||||| ||| ||||||||    
T  14641200 atttgattcattaatcattgttcttgccatttcttgtaaagtacgatttttcctttcaacaactccattttgttgaggagttct 14641283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 15179237 - 15178968
Alignment:
Q  16 aaccaaaaatgtggaaatttgagatattagcttttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaat 115  Q
    |||||||||| || |||| |||||| |||| |||| ||||| || |||||   ||||| || ||||||| |||||||||||||||||| |  ||| | ||    
T  15179237 aaccaaaaatatgaaaatatgagatgttaggttttatatttttccagagtaagtatggggttttgtttaaaatttttctaattgaaaccctgtttatgat 15179138  T
Q  116 atagcaaaatgtgttt--ggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctt 213  Q
    ||||||| | || |||  ||||| | ||||||| ||||| |  | ||| |||||||| || |||||||||| ||||| ||| |  |||||||||||||||    
T  15179137 atagcaagaagtatttatggctttagcccaaaagtatttctctacatttgattcatttaacattgttcttgccatttcttggagtgttctattttttctt 15179038  T
Q  214 tcagcaactccattttattgtggagttcttgcatat--aaaattacgtgagctctctttttcatcaaaga 281  Q
    ||| |||||||||||| |||||||||||||||| ||  ||||||| | ||| |  |||||||||||||||    
T  15179037 tcaacaactccattttgttgtggagttcttgcacatgaaaaattatgagagattcctttttcatcaaaga 15178968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 5388269 - 5388384
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  5388269 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 5388368  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  5388369 ttgtggagttcttgca 5388384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 6538464 - 6538349
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  6538464 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 6538365  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  6538364 ttgtggagttcttgca 6538349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 8505036 - 8504921
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  8505036 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 8504937  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  8504936 ttgtggagttcttgca 8504921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 9541594 - 9541709
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  9541594 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 9541693  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  9541694 ttgtggagttcttgca 9541709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 16138538 - 16138653
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  16138538 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 16138637  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  16138638 ttgtggagttcttgca 16138653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 26354653 - 26354768
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  26354653 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 26354752  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  26354753 ttgtggagttcttgca 26354768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 32102367 - 32102252
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  32102367 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 32102268  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  32102267 ttgtggagttcttgca 32102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 46501101 - 46500986
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  46501101 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 46501002  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  46501001 ttgtggagttcttgca 46500986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 610390 - 610207
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  ||||||  ||||||||||||| | ||     
T  610390 agagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaac 610291  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  610290 atttgattcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttct 610207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 44901242 - 44901171
Alignment:
Q  175 attgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    |||||||||| ||||| ||| || |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  44901242 attgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttgttgtggagttcttgca 44901171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 44901344 - 44901246
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctatt-ttttctttcagcaactccattt 228  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||| |||||||||| |||||||||||    
T  44901344 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctatttttttctttcaacaactccattt 44901246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 13663302 - 13663358
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||||||||||||||||    
T  13663302 catttcttgtaaagttctattctttctctctacaaccccattttattgtggagttct 13663358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 16552544 - 16552488
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  16552544 catttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 16552488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16613118 - 16613174
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  16613118 catttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 16613174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 24741006 - 24741062
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  24741006 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 24741062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 13544 - 13429
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  |||||||||| | || || ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||||||| ||||||||||||     
T  13544 tggcttctgcccaaaaataatcttcaacatttgattcatttaacatggttctagccatttcttgtaaagttctattttttctttcaacaactccattttg 13445  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  13444 ttgtggagttcttgca 13429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 14333 - 14448
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  ||||||| || |||| || ||| |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| ||||||||||||     
T  14333 tggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttg 14432  T
Q  231 ttgtggagttcttgca 246  Q
    ||||||||||||||||    
T  14433 ttgtggagttcttgca 14448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 149016 - 148885
Alignment:
Q  117 tagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttcttt 214  Q
    |||||| |||||||  |||||||  |||||||||| |||| || ||| |||||||| || || ||||| | ||||| |||||||||||||||||||||||    
T  149016 tagcaagatgtgttaatggcttctgcccaaaaataattttcaacatttgattcatttaacatggttctagccatttcttgtaaagttctattttttcttt 148917  T
Q  215 cagcaactccattttattgtggagttcttgca 246  Q
     | |||||| ||||| ||||||||||||||||    
T  148916 taacaactctattttgttgtggagttcttgca 148885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 19505 - 19375
Alignment:
Q  114 atatagcaaaatgtgtt--tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttc 211  Q
    ||||||||| |||||||  | |||||| ||||||||||||||| || ||| |||||||| || || ||||| | ||||| ||||||||||||||||||||    
T  19505 atatagcaagatgtgttaattgcttcagcccaaaaatatttttcaacatttgattcatttaacatggttctggccatttcttgtaaagttctattttttc 19406  T
Q  212 tttcagcaactccattttattgtggagttct 242  Q
    ||||| | || ||||||| ||| ||||||||    
T  19405 tttcaactacaccattttgttgaggagttct 19375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 46772 - 46887
Alignment:
Q  131 tggcttcaacccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttta 230  Q
    |||||||  |||||||||| |||| || | | |||||||| || |||||| | | ||||| ||||||||||||||||||||||||| ||||||||||||     
T  46772 tggcttctgcccaaaaataattttcaacaattgattcatttaacattgttttagccatttcttgtaaagttctattttttctttcaacaactccattttg 46871  T
Q  231 ttgtggagttcttgca 246  Q
    |||||||||| |||||    
T  46872 ttgtggagttattgca 46887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 84974 - 85057
Alignment:
Q  163 gattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    |||||||| || |||||||||| ||||| ||| || |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  84974 gattcatttaacattgttcttgccatttcttgcaaggttctattttttctttcaacaactccattttgttgtggagttcttgca 85057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 18565 - 18463
Alignment:
Q  140 cccaaaaatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagt 239  Q
    ||||||||||||||| || ||| || ||||| || || ||||||| ||||| || ||| || ||||||||||||||  |||| ||||||| ||| || ||    
T  18565 cccaaaaatatttttcaacatttgactcatttaaaatagttcttgccatttcttataatgtcctattttttctttctacaacaccattttgttgaggtgt 18466  T
Q  240 tct 242  Q
    |||    
T  18465 tct 18463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 9614 - 9431
Alignment:
Q  48 tttctatttatcgagagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaa 145  Q
    ||||| ||| || |||||| ||| || || || |||| || |||||| ||| |||| | ||||| ||| |||||| |||| |||  ||||||  ||||||    
T  9614 tttctttttttccagagttgatacggggttttatttaaaacttttcttatttaaactctattttaaatgtagcaagatgtatttatggcttctgcccaaa 9515  T
Q  146 aatattttttaatattagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccatttt 229  Q
    ||||||| | || ||| |||||||| || || ||||||| ||||| ||| ||||||||||||||||||||| ||||||||||||    
T  9514 aatatttctcaacatttgattcatttaaaatagttcttgccatttcttgcaaagttctattttttctttcaacaactccatttt 9431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 52673 - 52490
Alignment:
Q  61 agagttcatatggagtattgtttacaatttttctaattgaaacacaatttttaatatagcaaaatgtgttt--ggcttcaacccaaaaatattttttaat 158  Q
    |||||||||| || || ||||||| || |||||| |||||||| |  |||  ||| |||||| |||| |||  | ||||  ||||||||||||| | ||     
T  52673 agagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatgtcttctgcccaaaaatatttctcaac 52574  T
Q  159 attagattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||| |||||||| || || ||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  52573 atttgattcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttct 52490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 1904 - 1821
Alignment:
Q  163 gattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    |||||||| || |||||||||| ||||| ||| || ||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  1904 gattcatttaacattgttcttgccatttcttgcaaggttctgttttttctttcaacaactccattttgttgtggagttcttgca 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 29838 - 29755
Alignment:
Q  163 gattcattcaatattgttcttgtcattttttgtaaagttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    |||||||| || |||||||| | ||||| ||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  29838 gattcatttaacattgttctagccatttcttgcaaagtcctattttttctttcaacaactccattttgttgtggagttcttgca 29755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 62806 - 62853
Alignment:
Q  199 gttctattttttctttcagcaactccattttattgtggagttcttgca 246  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  62806 gttctgttttttctttcaacaactccattttgttgtggagttcttgca 62853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 160121 - 160065
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| ||||||||||||    
T  160121 catttcttgtaaagttctattctttctttctacaaccccattttgttgtggagttct 160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 23698 - 23752
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagtt 240  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| ||||||||||    
T  23698 catttcttgtaaagttctattctttctttctacaaccccattttgttgtggagtt 23752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 4504 - 4448
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  4504 catttcttgtaaagttctgttctttctttctacaaccccattttgttgtggagttct 4448  T

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Target: scaffold0863 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 1417 - 1361
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||| ||  |||| ||||||| ||||||||||||    
T  1417 catttcttgtaaagttctattctttctctctacaaccccattttgttgtggagttct 1361  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 4649 - 4705
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| |||||||||| |||| ||||| ||| |||| ||||||| ||||||||||||    
T  4649 catttcttgtaaagttatattctttctctcaacaaccccattttgttgtggagttct 4705  T

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Target: scaffold0315 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 5268 - 5324
Alignment:
Q  186 cattttttgtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||| ||||||||||||||| ||||||||  |||  ||||||| ||||||||||||    
T  5268 catttcttgtaaagttctattctttctttctacaatcccattttgttgtggagttct 5324  T

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Target: scaffold0084 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 45451 - 45499
Alignment:
Q  194 gtaaagttctattttttctttcagcaactccattttattgtggagttct 242  Q
    ||||||||||||| ||||||||  |||| ||||||| ||||||||||||    
T  45451 gtaaagttctattatttctttctacaaccccattttgttgtggagttct 45499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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