View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_60 (Length: 291)

Name: NF11932_low_60
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_60
NF11932_low_60
[»] chr1 (3 HSPs)
chr1 (24-154)||(41872999-41873132)
chr1 (233-284)||(41873201-41873252)
chr1 (233-284)||(14477317-14477368)
[»] chr4 (3 HSPs)
chr4 (24-154)||(42809762-42809895)
chr4 (233-284)||(42809633-42809684)
chr4 (233-284)||(49343402-49343453)
[»] scaffold0201 (2 HSPs)
scaffold0201 (24-154)||(22107-22240)
scaffold0201 (233-284)||(21976-22027)
[»] chr7 (3 HSPs)
chr7 (233-284)||(4299335-4299386)
chr7 (233-284)||(22114430-22114481)
chr7 (233-284)||(40509000-40509051)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 41872999 - 41873132
Alignment:
Q  24 catttttatctttccttactcctttcggtttctctctcttcttttgaatgtc---atttccagtttctaaacaacaatcaatctttatcattacaattgc 120  Q
    |||||| ||||||||||||||||| | |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  41872999 cattttgatctttccttactccttccagtttctctctcttcttttgaatgtctgtatttccagtttctaaacaacaatcaatctttatcattacaattgc 41873098  T
Q  121 aacaacaagaacaaacccaccatcatctgcaaat 154  Q
    |||||||||||||||||||||| |||||||||||    
T  41873099 aacaacaagaacaaacccaccaccatctgcaaat 41873132  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 41873201 - 41873252
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41873201 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 41873252  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 14477368 - 14477317
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  14477368 tcaacatcacatgaatttccaaaattgtaacattcctcattccttcatctca 14477317  T

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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 42809895 - 42809762
Alignment:
Q  24 catttttatctttccttactcctttcggtttctctctcttcttttgaatgtc---atttccagtttctaaacaacaatcaatctttatcattacaattgc 120  Q
    |||||| |||||||||||||||||   |||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  42809895 cattttgatctttccttactccttctagtttctctctcttcttttgaatgtctgcatttccagtttttaaacaacaatcaatctttatcattacaattgc 42809796  T
Q  121 aacaacaagaacaaacccaccatcatctgcaaat 154  Q
    |||||||||||||||||||||| |||||||||||    
T  42809795 aacaacaagaacaaacccaccaccatctgcaaat 42809762  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 42809684 - 42809633
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42809684 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 42809633  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 49343453 - 49343402
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  49343453 tcaacatcacatgaatttccagaattgtaacattcctcattccttcatctca 49343402  T

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Target: scaffold0201 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 22240 - 22107
Alignment:
Q  24 catttttatctttccttactcctttcggtttctctctcttcttttgaatgtc---atttccagtttctaaacaacaatcaatctttatcattacaattgc 120  Q
    |||||| ||||||||||||||||| | |||||||||||||||||||||||||   |||||||||||||||||||| ||||| ||||||||||||||||||    
T  22240 cattttgatctttccttactccttccagtttctctctcttcttttgaatgtctgcatttccagtttctaaacaactatcaacctttatcattacaattgc 22141  T
Q  121 aacaacaagaacaaacccaccatcatctgcaaat 154  Q
    |||||||||||||||||||||| ||| |||||||    
T  22140 aacaacaagaacaaacccaccaccatttgcaaat 22107  T

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Target: scaffold0201; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 22027 - 21976
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22027 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 21976  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 4299335 - 4299386
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  4299335 tcaacatcacatgaatttccagaattgtaacattcctcattccttcatctca 4299386  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 22114430 - 22114481
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  22114430 tcaacatcacatgaatttccagaattgcaacattcctcattccttcatctca 22114481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 40509000 - 40509051
Alignment:
Q  233 tcaacatcacatgaatttccataattgtaacattactcattccttcatctca 284  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  40509000 tcaacatcacatgaatttccagaattgcaacattcctcattccttcatctca 40509051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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