View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_61 (Length: 282)
Name: NF11932_low_61
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 12171405 - 12171668
Alignment:
| Q |
1 |
gtgattctttcctatgatgtccatgtcaatattagcttgtgcnnnnnnnncaagtttgcaactgttccaccatatgttaatatgaagcttctagtcgttg |
100 |
Q |
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| T |
12171405 |
gtgattatttcctatgatgtccatgacaatattagcttgtgcttgtttt-caagtttgcaaccgtttcaccatatgttaatatgaagctcctagtcattg |
12171503 |
T |
|
| Q |
101 |
cttcgcaatgac--cacacgttcaacatccaattgactgcgtttacataaacattattgttacatatctttccttcacctatattagaatatattctttc |
198 |
Q |
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|||| |||| | |||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12171504 |
cttcacaatctcgccacacgttcaacgtccaattgactgcgtttacatagacatttttgttacgtatctttccttcacctatattagaatatattctttc |
12171603 |
T |
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| Q |
199 |
tactgtgaacgtgtcacnnnnnnncatacagttatgtgtctatagttagtatgatgtaacgaagatt |
265 |
Q |
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||||||||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||| |
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| T |
12171604 |
tactgtgaatgtgtcacaaaagaac--acagttttgtgtctataggtagtatgatgtaacgaagatt |
12171668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 12415833 - 12416096
Alignment:
| Q |
1 |
gtgattctttcctatgatgtccatgtcaatattagcttgtgcnnnnnnnncaagtttgcaactgttccaccatatgttaatatgaagcttctagtcgttg |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||| ||| |
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| T |
12415833 |
gtgattatttcctatgatgtccatgacaatattagcttgtgcttgtttt-caagtttgcaaccgtttcaccatatgttaatatgaagctcctagtcattg |
12415931 |
T |
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| Q |
101 |
cttcgcaatgac--cacacgttcaacatccaattgactgcgtttacataaacattattgttacatatctttccttcacctatattagaatatattctttc |
198 |
Q |
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| T |
12415932 |
cttcacaatctcgccacacgttcaacgtccaattgactgcgtttacatagacatttttgttacgtatctttccttcacctatattagaatatattctttc |
12416031 |
T |
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| Q |
199 |
tactgtgaacgtgtcacnnnnnnncatacagttatgtgtctatagttagtatgatgtaacgaagatt |
265 |
Q |
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||||||||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||| |
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| T |
12416032 |
tactgtgaatgtgtcacaaaagaac--acagttttgtgtctataggtagtatgatgtaacgaagatt |
12416096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 1968405 - 1968360
Alignment:
| Q |
157 |
gttacatatctttccttcacctatattagaatatattctttctact |
202 |
Q |
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| T |
1968405 |
gttatatatctttcccccacctatatcagaatatattctttctact |
1968360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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