View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_69 (Length: 264)
Name: NF11932_low_69
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40147124 - 40146885
Alignment:
| Q |
1 |
agatgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40147124 |
agatgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatgga |
40147025 |
T |
|
| Q |
101 |
ataacctctctgatgaattgaatttttcgttatcatcagagtcattcttttgtgactctatagtaaaaggaaatcgtatgggatgttgaataccacttgg |
200 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40147024 |
ataacctctctgatggattgaacttttcgttatcatcagagtcattcttttgtggctctatagtaaaaggaaatcgtatgggatgttgaataccacttgg |
40146925 |
T |
|
| Q |
201 |
aaaccaacgttctagcgttatgagtttggatacttgattg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40146924 |
aaaccaacgttctagcgttatgagtttggatacttgattg |
40146885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 8102824 - 8102953
Alignment:
| Q |
4 |
tgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaata |
103 |
Q |
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|||| |||||||| ||| ||||| ||||||||||| ||||| | || | ||||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
8102824 |
tgtgcaaaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaaata |
8102923 |
T |
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| Q |
104 |
acctctctgatgaattgaatttttcgttat |
133 |
Q |
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|||| |||||| |||| ||||||||||| |
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| T |
8102924 |
acctaactgatgggttgagtttttcgttat |
8102953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 8103025 - 8103096
Alignment:
| Q |
169 |
ggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgttatgagtttggatacttgattg |
240 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| || ||| |||||||||| ||||||| |
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| T |
8103025 |
ggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtgttgagagtttggatgtttgattg |
8103096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 7655742 - 7655657
Alignment:
| Q |
134 |
catcagagtcattcttttgtgactctatagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgtt |
219 |
Q |
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||||||||| ||||||||||| ||||||||| |||||||||||||| || ||||||| ||| ||||||||||||| || |||||| |
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| T |
7655742 |
catcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgtt |
7655657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 7606777 - 7606854
Alignment:
| Q |
161 |
tagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgttatgagtttggatacttgat |
238 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| | ||||||||| ||||| |
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| T |
7606777 |
tagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgat |
7606854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 7629167 - 7629213
Alignment:
| Q |
166 |
aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttc |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
7629167 |
aaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttc |
7629213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 7615778 - 7615827
Alignment:
| Q |
166 |
aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctag |
215 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||||||||| ||||| |
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| T |
7615778 |
aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctag |
7615827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 39082796 - 39082834
Alignment:
| Q |
65 |
atttcagttgagcgattttctcctttgtgaaatggaata |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
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| T |
39082796 |
atttcagttccgcgattttctcctttgtgaaatggaata |
39082834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 7629008 - 7629084
Alignment:
| Q |
28 |
gatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaataa |
104 |
Q |
| |
|
||||||||| || |||||||||| ||||| ||| |||||||||| |||||||||||||||| || |||||||| |
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| T |
7629008 |
gatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcctttgtaaagtggaataa |
7629084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 11969370 - 11969428
Alignment:
| Q |
79 |
attttctcctttgtgaaatggaataacctctctgatgaattgaatttttcgttatcatc |
137 |
Q |
| |
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||||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| |
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| T |
11969370 |
attttctgctttgtgaaatggaataacctctctggtggattgagtttttctttttcatc |
11969428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 8935706 - 8935625
Alignment:
| Q |
134 |
catcagagtcattcttttgtgactctatagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctag |
215 |
Q |
| |
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||||||||| |||||||||| ||| | ||| |||||||||||||| || |||||| |||| ||||||||||||||||| |
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| T |
8935706 |
catcagagtgattcttttgttgctccaaagtgaaaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctag |
8935625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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