View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_7 (Length: 729)
Name: NF11932_low_7
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 90 - 336
Target Start/End: Complemental strand, 43616884 - 43616639
Alignment:
| Q |
90 |
acatttaagagcttattacaagcttgctcgcattttttggttgtgctgaaaatttagccatttatgctcttatgggtacgctttgtctgtaggttgatct |
189 |
Q |
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| T |
43616884 |
acatttacgagtttatgacaagcttgctcatattttt-ggctgtactgaaaatttagccatttatgctcttatgtttatgctttgtctgtaggttgatct |
43616786 |
T |
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| Q |
190 |
aatgatatctggaaatcaacctgtcaaagcaatggcttatatttgtgagcttaccctattctggactgtctttctgcctgctgagcatgaacctgtcatt |
289 |
Q |
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| T |
43616785 |
aatgataactggaaatcaacctgtcaaagcaatgacttatatttgtgagcttacactatttcagactgtctttactcttcctgagcatgaacttgtcatt |
43616686 |
T |
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| Q |
290 |
tcggatggatgtgaaaggtatatgtcgcatatatattcataaatgtg |
336 |
Q |
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| T |
43616685 |
tcggatgaatgtgaaaggtataagccgtagataaattcataaatgtg |
43616639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 135 - 336
Target Start/End: Complemental strand, 43647842 - 43647637
Alignment:
| Q |
135 |
ctgaaaatttagccatttatgctcttatgggtacg-ctttgtctgtaggttgatctaatgatatctggaaatcaacctgtcaaagcaatggcttatattt |
233 |
Q |
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| T |
43647842 |
ctgaaaatttggccatttatgttctcatgtttatgtctttgtctgtaggttgatttaatgatgtctggaaatcaacctgtcaaagcaatgacttatattt |
43647743 |
T |
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| Q |
234 |
gtgagcttaccctattctggactgtctt---tctgcctgctgagcatgaacctgtcatttcggatggatgtgaaaggtatatgtcgcatatatattcata |
330 |
Q |
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| T |
43647742 |
gtgagcttacactattctggactgtctttactcttcctgctgagcatgaacctgtcatttcggatgggtgtgaaaggtatatgttgtacataaattcatt |
43647643 |
T |
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| Q |
331 |
aatgtg |
336 |
Q |
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| T |
43647642 |
aatgtg |
43647637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 43617136 - 43616975
Alignment:
| Q |
88 |
ttacatttaagagcttattacaagcttgctcgcattttttggttgtgctgaaaatttagccatttatgctcttatgggtacg-ctttgtctgtaggttga |
186 |
Q |
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| T |
43617136 |
ttacatttacgagtttatgacaagcttgctcatattttt-ggttgtactgaaaatttagccatttatgctcttatgtttatggctttgtctgtaggttga |
43617038 |
T |
|
| Q |
187 |
tctaatgatatctggaaatcaacctgtcaaagcaatggcttatatttgtgagcttaccctatt |
249 |
Q |
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| T |
43617037 |
tctaatgatatctggaaatcaacctgtcaaagcaatgacttatatttgtgggcttacactatt |
43616975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 477 - 577
Target Start/End: Complemental strand, 43616496 - 43616396
Alignment:
| Q |
477 |
ccatgaatatctattatcaatctgatatcattaagagcctcagtgctctatttcttcctctcctacctaaatcctatatcttgctttgtactgtattttg |
576 |
Q |
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| T |
43616496 |
ccatgaatacctcttatctatctgatagtatttagagcctccattctctatttcttccgttcctacttatatcctatatcttgcattgtactttattttg |
43616397 |
T |
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| Q |
577 |
t |
577 |
Q |
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| |
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| T |
43616396 |
t |
43616396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 609 - 711
Target Start/End: Complemental strand, 12509271 - 12509169
Alignment:
| Q |
609 |
atgatagagcatggggtacagcaagcataaaatagggtccaatcattgaatcataatgctggtctcacgtgcacattctctagaagtttctagaagcata |
708 |
Q |
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| T |
12509271 |
atgatagggcatggggtacaacaagcataaaagagggtccaatcattgaatcataatgctggtctcacgtgcacattctctagaagtttctagaagcata |
12509172 |
T |
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| Q |
709 |
taa |
711 |
Q |
| |
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||| |
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|
| T |
12509171 |
taa |
12509169 |
T |
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