View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_70 (Length: 264)

Name: NF11932_low_70
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_70
NF11932_low_70
[»] chr5 (14 HSPs)
chr5 (165-247)||(34753014-34753094)
chr5 (166-247)||(25328024-25328103)
chr5 (165-247)||(624285-624365)
chr5 (165-247)||(15370188-15370268)
chr5 (166-247)||(1028507-1028586)
chr5 (163-247)||(42405585-42405665)
chr5 (183-243)||(3295352-3295410)
chr5 (183-247)||(6500539-6500601)
chr5 (183-247)||(18603127-18603189)
chr5 (183-235)||(36492224-36492274)
chr5 (183-247)||(40296322-40296384)
chr5 (192-247)||(13415776-13415829)
chr5 (184-247)||(32487482-32487543)
chr5 (192-247)||(41170723-41170776)
[»] chr4 (14 HSPs)
chr4 (166-247)||(39404107-39404186)
chr4 (183-247)||(1731652-1731714)
chr4 (165-247)||(25483425-25483505)
chr4 (183-247)||(36629326-36629388)
chr4 (183-247)||(39792865-39792927)
chr4 (180-247)||(32941125-32941190)
chr4 (165-209)||(54936320-54936364)
chr4 (165-247)||(3340896-3340976)
chr4 (183-245)||(22028374-22028434)
chr4 (165-247)||(54017582-54017662)
chr4 (183-247)||(23817686-23817748)
chr4 (183-247)||(44621091-44621153)
chr4 (183-247)||(49076836-49076898)
chr4 (184-247)||(54343014-54343075)
[»] chr8 (15 HSPs)
chr8 (164-247)||(40518160-40518241)
chr8 (165-246)||(6876851-6876930)
chr8 (183-247)||(3038297-3038359)
chr8 (183-247)||(40518671-40518733)
chr8 (180-247)||(30441174-30441239)
chr8 (184-247)||(34834965-34835026)
chr8 (166-244)||(40579259-40579335)
chr8 (165-235)||(41972262-41972330)
chr8 (165-211)||(3037958-3038004)
chr8 (166-247)||(3670149-3670227)
chr8 (183-247)||(5915956-5916018)
chr8 (184-247)||(3669776-3669837)
chr8 (165-209)||(9309106-9309150)
chr8 (165-209)||(9309479-9309523)
chr8 (184-247)||(45122713-45122774)
[»] chr2 (14 HSPs)
chr2 (165-247)||(14745656-14745736)
chr2 (165-247)||(36005869-36005949)
chr2 (166-211)||(16591006-16591051)
chr2 (163-247)||(5542612-5542694)
chr2 (183-247)||(6422199-6422261)
chr2 (183-247)||(36178612-36178674)
chr2 (165-247)||(962687-962767)
chr2 (166-244)||(42514741-42514817)
chr2 (166-247)||(6421474-6421553)
chr2 (182-247)||(14745299-14745363)
chr2 (183-247)||(15880352-15880414)
chr2 (183-247)||(37106277-37106339)
chr2 (183-247)||(41283482-41283544)
chr2 (165-244)||(15511485-15511561)
[»] chr6 (5 HSPs)
chr6 (166-247)||(16454996-16455075)
chr6 (166-235)||(16454676-16454743)
chr6 (183-247)||(29518592-29518654)
chr6 (183-247)||(29519009-29519071)
chr6 (183-247)||(32741268-32741330)
[»] chr1 (7 HSPs)
chr1 (180-247)||(32168702-32168767)
chr1 (165-247)||(41142461-41142542)
chr1 (183-247)||(3537606-3537668)
chr1 (163-235)||(44290811-44290881)
chr1 (183-235)||(21378066-21378116)
chr1 (183-247)||(34649527-34649589)
chr1 (163-247)||(40082495-40082577)
[»] chr7 (2 HSPs)
chr7 (183-247)||(1085623-1085685)
chr7 (185-247)||(40094783-40094843)
[»] chr3 (7 HSPs)
chr3 (183-247)||(41359498-41359560)
chr3 (183-247)||(42342097-42342159)
chr3 (183-247)||(42342395-42342457)
chr3 (169-247)||(37990632-37990708)
chr3 (183-247)||(37990984-37991046)
chr3 (183-247)||(43346798-43346860)
chr3 (180-247)||(22304658-22304723)
[»] scaffold0391 (1 HSPs)
scaffold0391 (165-209)||(1095-1139)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 34753014 - 34753094
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||| ||||||| |||||||| ||||||||||||||  | ||||||||||||| |||||||||||| ||| |||||||    
T  34753014 gggggagcttgggaaaccgtccacatcgaggctagaacaac--cgcacaagcaagagagacgccacactcttacccaaaacct 34753094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 25328103 - 25328024
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||  || ||||||||||||||||||||||||  ||||  |||||||| || ||||||||| ||| |||||||    
T  25328103 ggggagctcgggggaccgtccacattgaggctagaacaacc--acacttgcaagagagacaccacactcttacccaaaacct 25328024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 624365 - 624285
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||| ||| |||||||| ||||||||||||||  | ||||||  ||||| || ||||||||| ||| |||||||    
T  624365 gggggagctcggggaaccgtccacatcgaggctagaacaac--cccacaagtgagagagacaccacactcttacccaaaacct 624285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 15370268 - 15370188
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||  || |||||||| |||||||||||||   | ||||||||||||| || ||||||||| ||| |||||||    
T  15370268 gggggagctcgggggaccgtccacatcgaggctagaacaa--tcccacaagcaagagagacaccacactcttacccaaaacct 15370188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 1028507 - 1028586
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| |||  || |||||||| ||||||||||||||  | ||||||  ||||| |||||||||||| |||||||||||    
T  1028507 ggggagctagggggaccgtccacatcgaggctagaacaac--cgcacaagtgagagagacgccacactcttaccaaaaacct 1028586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 42405585 - 42405665
Alignment:
Q  163 tggggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||||  || |||||||| ||||||||||||||  | ||||||||||||  || ||||||||| ||| |||||||    
T  42405585 tggggggagctcgggggaccgtccacatcgaggctagaacaac--cgcacaagcaagag--acaccacactcttacccaaaacct 42405665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 3295352 - 3295410
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaa 243  Q
    |||||||| ||||||||||||||  ||||||||||||||| ||  |||||||| |||||||    
T  3295352 gtccacatcgaggctagaacaac--cacacaagcaagagagacaacacactcttaccaaaa 3295410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 6500601 - 6500539
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  6500601 gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 6500539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 18603127 - 18603189
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||| ||||||  ||||||||||| | |||||||||| ||| |||||||    
T  18603127 gtccacatcgaggctagaactaccaca--caagcaagagagatgccacactcttacccaaaacct 18603189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 36492224 - 36492274
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactct 235  Q
    |||||||| ||||||||||||||  ||||||||||||||| || |||||||||    
T  36492224 gtccacatcgaggctagaacaac--cacacaagcaagagagacaccacactct 36492274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 40296322 - 40296384
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  40296322 gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 40296384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 13415776 - 13415829
Alignment:
Q  192 gaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  13415776 gaggctagaacaaccgcaca--agcaagagagacgccacactcttacccaaaacct 13415829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 32487543 - 32487482
Alignment:
Q  184 tccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||| ||||||||||||||  |||| |||||||||| ||| |||||||| ||| |||||||    
T  32487543 tccacatcgaggctagaacaac--cacataagcaagagatacgtcacactcttacccaaaacct 32487482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 41170776 - 41170723
Alignment:
Q  192 gaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||||||||||  ||||||| |||| ||||||||| ||| |||||||    
T  41170776 gaggctagaacaaccacaca--agcaagaaaaacaccacactcttacccaaaacct 41170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 39404186 - 39404107
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||  || |||||||| ||||||||||||||||  ||||||||||||| |||||||||||| ||| |||||||    
T  39404186 ggggagctcgggggaccgtccacatcgaggctagaacaacca--cacaagcaagagagacgccacactcttacccaaaacct 39404107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 1731652 - 1731714
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||| ||| |||||||    
T  1731652 gtccacattgaggctagaacaac--cacacaagcaagagaaacaccacactcttacccaaaacct 1731714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 25483505 - 25483425
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||  |||| || |||||||| ||||||||||||||||  ||||||||||||| || ||||||||| ||| |||||||    
T  25483505 gggggagccagggagaccgtccacatcgaggctagaacaacca--cacaagcaagagagacaccacactcttacccaaaacct 25483425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 36629388 - 36629326
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||||  ||||||||||||| || ||||||||| ||| |||||||    
T  36629388 gtccacatcgaggctagaacaacca--cacaagcaagagagacaccacactcttacccaaaacct 36629326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 39792865 - 39792927
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||  ||||||||||||||| || ||||||||| ||| |||||||    
T  39792865 gtccacatcgaggctagaacaac--cacacaagcaagagagacaccacactcttacccaaaacct 39792927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 32941125 - 32941190
Alignment:
Q  180 actgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||| ||||||||||||||  | ||||||||||||| ||| |||||||| ||| |||||||    
T  32941125 actgtccacatcgaggctagaacaac--cgcacaagcaagagagacgtcacactcttacccaaaacct 32941190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 54936364 - 54936320
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccaca 209  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||    
T  54936364 gggggagctcgggggactgtccacatcgaggctagaacaaccaca 54936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 3340976 - 3340896
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||| ||| || |||||||| ||||||||||||||  | ||||||||||| | || ||||||||| ||| |||||||    
T  3340976 gggggagctcaggagaccgtccacatcgaggctagaacaac--cccacaagcaagaaagacaccacactcttacccaaaacct 3340896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 22028374 - 22028434
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaac 245  Q
    |||||||||||||||||||||||  | ||||||||||||| || ||||||||| ||| |||||    
T  22028374 gtccacattgaggctagaacaac--ctcacaagcaagagagacaccacactcttacccaaaac 22028434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 54017582 - 54017662
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||| |||| || |||||||| ||||||||||||||  |||| |||||||||| ||  |||||||| ||| |||||||    
T  54017582 gggggagctagggagaccgtccacatcgaggctagaacaac--cacataagcaagagagacatcacactcttacctaaaacct 54017662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 23817686 - 23817748
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||  ||||| ||||||||| || ||||||||| ||| |||||||    
T  23817686 gtccacatcgaggctagaacaac--cacactagcaagagagacaccacactcttacccaaaacct 23817748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 44621153 - 44621091
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| |||||||||| |||| ||||  |||||||||||| ||||||||| ||| |||||||    
T  44621153 gtccacatcgaggctagaataaccgcaca--agcaagagaaacaccacactcttacccaaaacct 44621091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 49076836 - 49076898
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||| | || ||||||||||||| |||||||    
T  49076836 gtccacatcgaggctagaacaaccgcaca--agcaagaaagacaccacactctaacccaaaacct 49076898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 54343014 - 54343075
Alignment:
Q  184 tccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||| ||||||||||||||  ||| ||||||||||| || ||||||||| ||| |||||||    
T  54343014 tccacatcgaggctagaacaac--cactcaagcaagagagacaccacactcttacccaaaacct 54343075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 40518241 - 40518160
Alignment:
Q  164 ggggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||||  || ||||||||  |||||||||||||||||||  ||||||||| |||||||||||| ||| |||||||    
T  40518241 ggggggagctcgggggaccgtccacatcaaggctagaacaaccacaca--agcaagagagacgccacactcttacccaaaacct 40518160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 6876851 - 6876930
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacc 246  Q
    |||||||||||||  || |||||||| ||||||||||||||  ||||||| |||||||||| ||||||||| ||| ||||||    
T  6876851 gggggagctcgggggaccgtccacatcgaggctagaacaac--cacacaaacaagagaaacaccacactcttacccaaaacc 6876930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 3038297 - 3038359
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||  ||||||||||||||| | |||||||||| ||| |||||||    
T  3038297 gtccacatcgaggctagaacaac--cacacaagcaagagagatgccacactcttacccaaaacct 3038359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 40518733 - 40518671
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||||||||||||||  ||||||||||||  ||| |||||||| ||| |||||||    
T  40518733 gtccacattgaggctagaacaacca--cacaagcaagagtgacgtcacactcttacccaaaacct 40518671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 30441239 - 30441174
Alignment:
Q  180 actgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||| ||||||||||||||  | ||||||||||||| || ||||||||| ||| |||||||    
T  30441239 actgtccacatcgaggctagaacaac--cgcacaagcaagagagacaccacactcttacccaaaacct 30441174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 34835026 - 34834965
Alignment:
Q  184 tccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||| ||||||||||||||||||||  ||||||||| || ||||||||| ||| |||||||    
T  34835026 tccacatcgaggctagaacaaccacaca--agcaagagagacaccacactcttacccaaaacct 34834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 40579259 - 40579335
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaa 244  Q
    ||||||||||||  || |||||||| ||||||||||||||  | ||||||||||||| || ||||||||| ||| ||||    
T  40579259 ggggagctcgggggacagtccacatcgaggctagaacaac--cgcacaagcaagagagacaccacactcttacccaaaa 40579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 41972330 - 41972262
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactct 235  Q
    ||||||| |||||| || ||||| ||||||||| |||||||||  ||||||||||||  ||||||||||||    
T  41972330 gggggagttcgggagaccgtccatattgaggctggaacaacca--cacaagcaagagtgacgccacactct 41972262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 3037958 - 3038004
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacaca 211  Q
    |||||||||||||  || |||||||| ||||||||||||||||||||    
T  3037958 gggggagctcgggggaccgtccacatcgaggctagaacaaccacaca 3038004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 3670227 - 3670149
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||| | |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  3670227 ggggagctagggaacc-gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 3670149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 5916018 - 5915956
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  5916018 gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 5915956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 3669837 - 3669776
Alignment:
Q  184 tccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  3669837 tccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 3669776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 9309150 - 9309106
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccaca 209  Q
    |||||||||||||  || |||||||| ||||||||||||||||||    
T  9309150 gggggagctcgggggaccgtccacatcgaggctagaacaaccaca 9309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 9309523 - 9309479
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccaca 209  Q
    |||||||||||||  || |||||||| ||||||||||||||||||    
T  9309523 gggggagctcgggggaccgtccacatcgaggctagaacaaccaca 9309479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 45122774 - 45122713
Alignment:
Q  184 tccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||| |||||| |||||||||||||  ||||||||| |||||||||||  ||| |||||||    
T  45122774 tccacatcgaggcttgaacaaccacaca--agcaagagagacgccacactcatacccaaaacct 45122713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 14745656 - 14745736
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||  ||||||||||| ||||||||||||||  |||||  |||||||| |||||||||||| ||| |||||||    
T  14745656 gggggagctcgggggactgtccacatcgaggctagaacaac--cacacttgcaagagagacgccacactcttacccaaaacct 14745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 36005869 - 36005949
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||| || ||||||||||| ||||||||||||||  | ||||||||||||| |||||||||| | ||| |||||||    
T  36005869 gggggagctcgagagactgtccacatcgaggctagaacaac--cccacaagcaagagagacgccacacttttacccaaaacct 36005949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 16591051 - 16591006
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacaca 211  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  16591051 ggggagctcgggagactgtccacattgaggctagaacaaccccaca 16591006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 5542612 - 5542694
Alignment:
Q  163 tggggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||||  || |||||||| ||| || |||||||| ||||  ||||||||| || ||||||||| |||||||||||    
T  5542612 tggggggagctcgggggaccgtccacatcgagacttgaacaaccgcaca--agcaagagagacaccacactcttaccaaaaacct 5542694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 6422261 - 6422199
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||||  ||||||||||||| || ||||||||| ||| |||||||    
T  6422261 gtccacatcgaggctagaacaacca--cacaagcaagagagacaccacactcttacctaaaacct 6422199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 36178612 - 36178674
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||  ||||||||||||||| || ||||||||| ||| |||||||    
T  36178612 gtccacatagaggctagaacaac--cacacaagcaagagagacaccacactcttacccaaaacct 36178674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 962767 - 962687
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||| |||||| || |||||||| ||||||||||||||||  ||||||||||||  ||  |||||||| ||| |||||||    
T  962767 gggggagttcgggagaccgtccacatcgaggctagaacaacca--cacaagcaagagtgacaacacactcttacccaaaacct 962687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 42514817 - 42514741
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaa 244  Q
    ||||||||||||  || |||||||| ||||||||||||||  | |||||| |||||| |||||||||||| ||| ||||    
T  42514817 ggggagctcgggggaccgtccacatcgaggctagaacaac--cccacaagtaagagagacgccacactcttacccaaaa 42514741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 6421553 - 6421474
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||  || |||||||| ||| ||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  6421553 ggggagctcgggggaccgtccacatcgagactagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 6421474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 14745299 - 14745363
Alignment:
Q  182 tgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||| ||||||||||||||||| |||   ||||||| |||||||||||| ||| |||||||    
T  14745299 tgtccacatcgaggctagaacaaccac-cacttacaagagagacgccacactcttacccaaaacct 14745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 15880414 - 15880352
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||| ||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  15880414 gtccacatcgaggctaaaacaaccgcaca--agcaagagagacgccacactcttacccaaaacct 15880352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 37106339 - 37106277
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||| | ||||  |||||||||||| ||||||||| ||| |||||||    
T  37106339 gtccacatcgaggctagaacaatcgcaca--agcaagagaaacaccacactcttacccaaaacct 37106277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 41283482 - 41283544
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||  ||||||||||||||||||| |  ||||||| |||||||||||| ||| |||||||    
T  41283482 gtccacatcaaggctagaacaaccacacaaa--caagagagacgccacactcttacctaaaacct 41283544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 15511485 - 15511561
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaa 244  Q
    ||||||||||||| | | |||||||| ||| ||||||||||  ||||||||||||||| || ||||||||| ||| ||||    
T  15511485 gggggagctcggggatc-gtccacatcgagactagaacaac--cacacaagcaagagagacaccacactcttacccaaaa 15511561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 16455075 - 16454996
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||  || |||||||| ||||||||||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  16455075 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcaca--agcaagagagacgccacactcttacccaaaacct 16454996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 16454743 - 16454676
Alignment:
Q  166 ggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactct 235  Q
    ||||||||||||  || |||||||| ||||||||||||||  | ||||||||||||| ||||||||||||    
T  16454743 ggggagctcgggggaccgtccacatcgaggctagaacaac--cgcacaagcaagagagacgccacactct 16454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 29518654 - 29518592
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  29518654 gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 29518592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 29519071 - 29519009
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  29519071 gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 29519009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 32741330 - 32741268
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  32741330 gtccacatcgaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 32741268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 32168702 - 32168767
Alignment:
Q  180 actgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  32168702 actgtccacatcgaggctagaacaaccgcaca--agcaagagagacgccacactcttacccaaaacct 32168767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 41142542 - 41142461
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactc-taaccaaaaacct 247  Q
    |||||| ||||||  || |||||||| ||||||||||||||||  ||||||||||||| ||||||||||| | |||||||||||    
T  41142542 gggggaactcgggggaccgtccacatcgaggctagaacaacca--cacaagcaagagagacgccacactctttaccaaaaacct 41142461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 3537606 - 3537668
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  3537606 gtccacatcgaggctagaacaaccgcaca--agcaagagagacgccacactcttacccaaaacct 3537668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 44290811 - 44290881
Alignment:
Q  163 tggggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactct 235  Q
    |||||||||||||||  || |||||||| ||||||||||||||  | ||||||||||||| || |||||||||    
T  44290811 tggggggagctcgggggaccgtccacatcgaggctagaacaac--cgcacaagcaagagatacaccacactct 44290881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 21378066 - 21378116
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactct 235  Q
    |||||||||||||||||||||||  ||||||||||| | | ||||||||||||    
T  21378066 gtccacattgaggctagaacaac--cacacaagcaatatagacgccacactct 21378116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 34649589 - 34649527
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| |||||||||||||||  |||| ||||||||| ||||| |||||| ||| |||||||    
T  34649589 gtccacatcgaggctagaacaacc--acactagcaagagagacgcctcactcttacccaaaacct 34649527  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 40082577 - 40082495
Alignment:
Q  163 tggggggagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||||||   ||| ||||||| |||||||||||||  || ||||||||||||| |  ||||||||| ||| |||||||    
T  40082577 tggggggagctcggaggactatccacatcgaggctagaacaa--acgcacaagcaagagagataccacactcttacccaaaacct 40082495  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 1085623 - 1085685
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||  |||||||| |||||| |||||||||||| ||| |||||||    
T  1085623 gtccacatcgaggctagaacaac--cacacaagtaagagagacgccacactcttacccaaaacct 1085685  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 40094783 - 40094843
Alignment:
Q  185 ccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||| ||||||||||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  40094783 ccacatcgaggctagaacaacctcaca--agcaagagagacgccacactcttacccaaaacct 40094843  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 41359498 - 41359560
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||||||||||||  | ||||||||| ||| |||||||||||| ||| |||||||    
T  41359498 gtccacattgaggctagaacaac--cgcacaagcaaaagagacgccacactcttacccaaaacct 41359560  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 42342097 - 42342159
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| |||||||||||| ||| |||||||    
T  42342097 gtccacatcgaggctagaacaaccgcaca--agcaagagagacgccacactcttacccaaaacct 42342159  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 42342395 - 42342457
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||||||||||||||||  | ||||||||||||| ||| |||||||| ||| |||||||    
T  42342395 gtccacattgaggctagaacaac--cgcacaagcaagagagacgtcacactcttacccaaaacct 42342457  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 37990632 - 37990708
Alignment:
Q  169 gagctcgggaaactgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||||  || |||||||| ||||||||||||| ||||  ||||||||||| || ||||||||| ||| |||||||    
T  37990632 gagctcgggggaccgtccacatcgaggctagaacaatcaca--caagcaagagagacaccacactcttacccaaaacct 37990708  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 37990984 - 37991046
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||  |||| |||||||||| || ||||||||| ||| |||||||    
T  37990984 gtccacatcgaggctagaacaac--cacataagcaagagagacaccacactcttacccaaaacct 37991046  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 43346798 - 43346860
Alignment:
Q  183 gtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    |||||||| ||||||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  43346798 gtccacatagaggctagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 43346860  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 22304723 - 22304658
Alignment:
Q  180 actgtccacattgaggctagaacaaccacacacaagcaagagaaacgccacactctaaccaaaaacct 247  Q
    ||||||||||| ||| ||||||||||| ||||  ||||||||| || ||||||||| ||| |||||||    
T  22304723 actgtccacatcgagactagaacaaccgcaca--agcaagagagacaccacactcttacccaaaacct 22304658  T

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Target: scaffold0391 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 1095 - 1139
Alignment:
Q  165 gggggagctcgggaaactgtccacattgaggctagaacaaccaca 209  Q
    ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  1095 gggggagcttggggaaccgtccacatcgaggctagaacaaccaca 1139  T

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