View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_71 (Length: 253)

Name: NF11932_low_71
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_71
NF11932_low_71
[»] chr7 (6 HSPs)
chr7 (1-253)||(17980786-17981038)
chr7 (1-249)||(17974134-17974382)
chr7 (1-68)||(17981080-17981147)
chr7 (1-68)||(17974424-17974491)
chr7 (1-69)||(2505850-2505919)
chr7 (36-69)||(13281785-13281818)
[»] chr3 (1 HSPs)
chr3 (1-66)||(25530752-25530818)
[»] chr1 (1 HSPs)
chr1 (1-69)||(27912070-27912140)
[»] chr5 (1 HSPs)
chr5 (20-69)||(28280289-28280339)
[»] chr6 (1 HSPs)
chr6 (36-69)||(34395415-34395448)
[»] chr4 (1 HSPs)
chr4 (1-67)||(17661963-17662031)
[»] chr2 (1 HSPs)
chr2 (1-68)||(4057113-4057181)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 17981038 - 17980786
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaattgagggagaaagtcaacacaatttccataaaaa 100  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||     
T  17981038 tattcttaacatatttttcaatcattttcttttagtttaatccaaaatagaggactattagaacaattgagggagaaagtcaacacaatttccataaaag 17980939  T
Q  101 atttctccctctaaatttgagcctgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagacacccgacatcaagtttaa 200  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  17980938 ttttctccctctaaatttgagcatgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagactcctgacttcaagtttaa 17980839  T
Q  201 tgtaccctgaacccaaaccatatgtaggccctcgatttttgcaaactgaaatt 253  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17980838 tgtaccctgaacccaaaccatatgtaggtcctcgatttttgcaaactgaaatt 17980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 17974382 - 17974134
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaattgagggagaaagtcaacacaatttccataaaaa 100  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  17974382 tattcttaacatatttttcaatcattttcttttagtttaatccaaaatagaggagtattagaacaattgagggagaaagtcaacacaatttccataaaag 17974283  T
Q  101 atttctccctctaaatttgagcctgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagacacccgacatcaagtttaa 200  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||    
T  17974282 ttttctccctctaaatttgagcatgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagactcctgacttcaagcttaa 17974183  T
Q  201 tgtaccctgaacccaaaccatatgtaggccctcgatttttgcaaactga 249  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17974182 tgtaccctgaacccaaaccatatgtaggtcctcgatttttgcaaactga 17974134  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17981147 - 17981080
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaatt 68  Q
    |||| |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  17981147 tatttttaacatatttttcagttattttattttagtttaatccaaaatagaggagtattagaacaatt 17981080  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17974491 - 17974424
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaatt 68  Q
    |||| |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||| ||||||||    
T  17974491 tatttttaacatatttttcagttattttattttagtttaatccaaaatagaggagtatttgaacaatt 17974424  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2505919 - 2505850
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttagttta-atccaaaatagtggagtattagaacaattg 69  Q
    |||||||| |||||||| ||||||||||  ||||||||  ||||||||||| ||||| ||||||||||||    
T  2505919 tattcttagcatatttttcagtcatttttatttagtttcgatccaaaatagaggagttttagaacaattg 2505850  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 13281785 - 13281818
Alignment:
Q  36 tttaatccaaaatagtggagtattagaacaattg 69  Q
    ||||||||||||||| ||||||||||||||||||    
T  13281785 tttaatccaaaatagaggagtattagaacaattg 13281818  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25530752 - 25530818
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttagttt-aatccaaaatagtggagtattagaacaa 66  Q
    |||||||| |||||||| ||||||||||  |||||||| |||||||||||| |||||||||||||||    
T  25530752 tattcttagcatatttttcagtcatttttatttagttttaatccaaaatagaggagtattagaacaa 25530818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27912140 - 27912070
Alignment:
Q  1 tattcttaacatattttgcagtcattttct-tttagttt-aatccaaaatagtggagtattagaacaattg 69  Q
    |||||||||||| |||| |||||||||| | |||||||| |||||||||||| ||||||||||||||||||    
T  27912140 tattcttaacatgtttttcagtcattttttatttagttttaatccaaaatagaggagtattagaacaattg 27912070  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 28280339 - 28280289
Alignment:
Q  20 agtcattttcttttagttt-aatccaaaatagtggagtattagaacaattg 69  Q
    |||||||||  |||||||| |||||||||||| ||||||||||||||||||    
T  28280339 agtcatttttatttagttttaatccaaaatagaggagtattagaacaattg 28280289  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 34395415 - 34395448
Alignment:
Q  36 tttaatccaaaatagtggagtattagaacaattg 69  Q
    ||||||||||||||| ||||||||||||||||||    
T  34395415 tttaatccaaaatagaggagtattagaacaattg 34395448  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17662031 - 17661963
Alignment:
Q  1 tattcttaacatattttgcagtcattttct-tttagttt-aatccaaaatagtggagtattagaacaat 67  Q
    |||||| | |||||||| |||||||||| | |||||||| |||||||||||  ||||||||||||||||    
T  17662031 tattctaagcatatttttcagtcattttttatttagttttaatccaaaataaaggagtattagaacaat 17661963  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4057113 - 4057181
Alignment:
Q  1 tattcttaacatattttgcagtcattttcttttag-tttaatccaaaatagtggagtattagaacaatt 68  Q
    |||| ||| |||||||| |||||||||||  |||| |||| | |||||||| |||||||||||||||||    
T  4057113 tatttttagcatatttttcagtcattttcagttagctttatttcaaaatagaggagtattagaacaatt 4057181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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