View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_75 (Length: 247)

Name: NF11932_low_75
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_75
NF11932_low_75
[»] chr7 (7 HSPs)
chr7 (8-68)||(21867711-21867771)
chr7 (67-142)||(22815645-22815718)
chr7 (173-242)||(22840569-22840638)
chr7 (173-237)||(22831547-22831611)
chr7 (173-237)||(22805825-22805889)
chr7 (173-237)||(22810160-22810227)
chr7 (173-237)||(22858935-22858999)
[»] chr5 (2 HSPs)
chr5 (8-68)||(7955666-7955726)
chr5 (8-68)||(1593063-1593123)
[»] chr4 (3 HSPs)
chr4 (8-68)||(30200248-30200308)
chr4 (8-67)||(27365975-27366034)
chr4 (8-68)||(45112682-45112742)
[»] chr8 (5 HSPs)
chr8 (8-67)||(20267156-20267215)
chr8 (8-67)||(21053785-21053844)
chr8 (8-68)||(18630408-18630468)
chr8 (8-68)||(15362979-15363039)
chr8 (8-68)||(18166854-18166914)
[»] chr3 (2 HSPs)
chr3 (8-68)||(20320977-20321037)
chr3 (8-68)||(34151722-34151782)
[»] chr1 (4 HSPs)
chr1 (8-67)||(34917671-34917730)
chr1 (8-68)||(34025316-34025376)
chr1 (173-237)||(21150134-21150198)
chr1 (66-126)||(21150046-21150101)
[»] chr2 (2 HSPs)
chr2 (8-68)||(603987-604047)
chr2 (8-68)||(12336298-12336358)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 21867711 - 21867771
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  21867711 caaaggtattggtcagggtatatacttgttttttaatacataacaagagtaccctgtttca 21867771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 22815718 - 22815645
Alignment:
Q  67 catgtgatgtttcttttagtaataaagtaattcatagctagattccaggacatttcttagtacgtaggacccaaat 142  Q
    |||||||||||||||||||||||||  |||||| ||||||  ||||||||||||||||||||| ||||||||||||    
T  22815718 catgtgatgtttcttttagtaataa--taattcctagctaagttccaggacatttcttagtacctaggacccaaat 22815645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 22840638 - 22840569
Alignment:
Q  173 cttataaataataaacaccgaacagcacaacagaagcatcattcattcacgaactataatgatgtccatc 242  Q
    ||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||| |||| ||||    
T  22840638 cttataaataataaacaccaaacagaactacagaagcatcatttattcacaaactataatcatgttcatc 22840569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 22831611 - 22831547
Alignment:
Q  173 cttataaataataaacaccgaacagcacaacagaagcatcattcattcacgaactataatgatgt 237  Q
    ||||||||||||||||||||||||| || ||| |||||| |||||||||| ||||||||| ||||    
T  22831611 cttataaataataaacaccgaacagaactacacaagcattattcattcacaaactataatcatgt 22831547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 22805889 - 22805825
Alignment:
Q  173 cttataaataataaacaccgaacagcacaacagaagcatcattcattcacgaactataatgatgt 237  Q
    ||||||||||||||||||||||||| || ||| |||||| |||||||| | ||||||||| ||||    
T  22805889 cttataaataataaacaccgaacagaactacacaagcattattcattctcaaactataatcatgt 22805825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 22810227 - 22810160
Alignment:
Q  173 cttataaataataaacaccgaacagc---acaacagaagcatcattcattcacgaactataatgatgt 237  Q
    |||||||||||||||||  |||||||   || |||||||||| |||||||||| ||||||||| ||||    
T  22810227 cttataaataataaacattgaacagcagaactacagaagcattattcattcacaaactataatcatgt 22810160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 22858999 - 22858935
Alignment:
Q  173 cttataaataataaacaccgaacagcacaacagaagcatcattcattcacgaactataatgatgt 237  Q
    ||||||||||| ||||||||||||| || ||| ||||||  ||||||||| ||||| ||| ||||    
T  22858999 cttataaataacaaacaccgaacagaactacacaagcattgttcattcacaaactaaaatcatgt 22858935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 7955726 - 7955666
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  7955726 caaaggtattggtcagggtatatacttgttttttaatacataacaagagtaccctgtttca 7955666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 1593123 - 1593063
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  1593123 caaaggtattggtcatggtatatacttgttttttaatacataacaagagtaccctgtttca 1593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 30200248 - 30200308
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  30200248 caaaggtattggtcagggtatatacttgttttttaatacataacaagagtaccctgtttca 30200308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 27365975 - 27366034
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttc 67  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  27365975 caaaggtattggtcatgatatatacttgttttttaatacataacaagagtaccctgtttc 27366034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 45112682 - 45112742
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  45112682 caaaggtattggtcagggtatatactttttttttaatacataacaagagtaccctgtttca 45112742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 20267215 - 20267156
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttc 67  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  20267215 caaaggtattggtcaggatatatacttgttttttaatacataacaagagtaccttgtttc 20267156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 21053844 - 21053785
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttc 67  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  21053844 caaaggtattggtcaggatatatacttgttttttaatacataacaagagtaccttgtttc 21053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 18630468 - 18630408
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  18630468 caaaggtattggtcagggtatatacttgttttttaatacataacaagagtactctgtttca 18630408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 15363039 - 15362979
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||    
T  15363039 caaaggtattggtcagcgtatatacttgttttttaatacataacaagagtaccatgtttca 15362979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 18166914 - 18166854
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  18166914 caaaggtattggtcagagtatatacttgttttttaatacataacaagagtactctgtttca 18166854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 20321037 - 20320977
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  20321037 caaaggtattggtcagggtatatacttattttttaatacataacaagagtaccctgtttca 20320977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 34151782 - 34151722
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  34151782 caaaggtattggtcagggtatatacttattttttaatacataacaagagtaccctgtttca 34151722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 34917730 - 34917671
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttc 67  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  34917730 caaaggtattgatcatgatatatacttgttttttaatacataacaagagtaccctgtttc 34917671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 34025376 - 34025316
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  34025376 caaaggtattggtcagagtatatacttgttttttaatacataacaagagtactctgtttca 34025316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 21150134 - 21150198
Alignment:
Q  173 cttataaataataaacaccgaacagcacaacagaagcatcattcattcacgaactataatgatgt 237  Q
    ||||||||||||||||| | ||||| || ||||||||||  ||||||||| ||||||||| ||||    
T  21150134 cttataaataataaacatcaaacagaactacagaagcattgttcattcacaaactataatcatgt 21150198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 21150046 - 21150101
Alignment:
Q  66 tcatgtgatgtttcttttagtaataaagtaattcatagctagattccaggacatttcttag 126  Q
    |||||||||||||||||||||||     |||||| ||||||| |||| |||||||||||||    
T  21150046 tcatgtgatgtttcttttagtaa-----taattcgtagctaggttcccggacatttcttag 21150101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 603987 - 604047
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    |||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  603987 caaaggtattagtcaggatatatatttgttttttaatacataataagagtaccctgtttca 604047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 12336358 - 12336298
Alignment:
Q  8 caaaggtattggtcaggatatatacttgttttttaatatataacaagagtaccctgtttca 68  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||    
T  12336358 caaaggtattggtcagcgtatatacttgttttttaatacataacaagagtaccatgtttca 12336298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University