View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_77 (Length: 243)
Name: NF11932_low_77
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_77 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 37134629 - 37134854
Alignment:
| Q |
18 |
aggcatttggcaaacacgatagttaattattgatggcaaaaatataattaatggattatgaaatttatagtacactctttcaacatacagtgaggttgag |
117 |
Q |
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| T |
37134629 |
aggcatttggcaaacacgttagttaattattgatggcaaaaatataattaatggattatgaaatttatagtacactctttcaacatacagtgaggttgag |
37134728 |
T |
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| Q |
118 |
tgaataattgaatactatgaaatactacaatgaggatgaacacacattaataattaaaacaaaggaaagttacttcacattcattttatttatgcattat |
217 |
Q |
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| T |
37134729 |
tgaataatggaataatatgaaatactacaatgaggatgaacacacattaataattaaaacaaaggaaaattacttcacattcattttatttatgcattat |
37134828 |
T |
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| Q |
218 |
tgaattagtgcatcttagaaaggaaa |
243 |
Q |
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| T |
37134829 |
tgaattagtgcatcttagaaaggaaa |
37134854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 37138787 - 37138835
Alignment:
| Q |
133 |
tatgaaatactacaatgaggatgaacacacattaataattaaaacaaag |
181 |
Q |
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| T |
37138787 |
tatgaaatgttacaatcaggatgaacacaccttaataactaaaacaaag |
37138835 |
T |
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