View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_low_8 (Length: 689)
Name: NF11932_low_8
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_8 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Original strand, 31716912 - 31717583
Alignment:
| Q |
1 |
cagatttgaagccacttgaggtgtctattgctgaaaaagagttgaaaaagcgagaaaagaaagatattttagctgcccatgtggctgaacaggcaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31716912 |
cagatttgaagccacttgaggtgtctattgctgaaaaagagttgaaaaagcgagaaaagaaagatattttagctgcccatgtggctgaacaggcaaagaa |
31717011 |
T |
|
| Q |
101 |
ggaagctcttagggatgatcgtgatgctttcactgttgtaattggaagtcgggcttcagtgcttgatggagacgatggtgctgatgctaatgtcaaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717012 |
ggaagctcttagggatgatcgtgatgctttcactgttgtaattggaagtcgggcttcagtgcttgatggagacgatggtgctgatgctaatgtcaaagat |
31717111 |
T |
|
| Q |
201 |
ataacgatagaaaatttttctgtggctgctcggggtaaagaacttctgaagaatacttcagtgaagatatcccatggaaaacgttatggtttgattgggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31717112 |
ataacgatagaaaatttttctgtggctgctcggggtaaagaacttctgaagaatacttcagtgaagatatcccatggaaaacgttatggtttgattgggc |
31717211 |
T |
|
| Q |
301 |
cgaatggaatgggcaagtcaacgcttttgaagcttcttgcttggaggaagataccggtacctaagaatattgatgtccttctggttgagcaggaggtagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717212 |
cgaatggaatgggcaagtcaacgcttttgaagcttcttgcttggaggaagataccggtacctaagaatattgatgtccttctggttgagcaggaggtagt |
31717311 |
T |
|
| Q |
401 |
tggtgatgataaaacagcgcttgaagctgttgtttcagctaatgttgaacttattaaagttcgacaaaaagttgctgatctacaaaatatagcttctggt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31717312 |
tggtgatgataaaacagcgcttgaagctgttgtttcagctaatgttgaacttattaaagttcgacaaaaagttgctgatctacaaaatatagcttctggt |
31717411 |
T |
|
| Q |
501 |
gaagaaggcatggataaagatcatactaatgaggaagaggatgcgggagaaaagctagcagagctgtatgaacaattacaactgatggggtctgatgctg |
600 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31717412 |
gaagaaggcatggataaagatgatactaatgaggaagaggatgcgggagaaaagctagcagagctgtatgaacaattacaactgatggggtctgatgctg |
31717511 |
T |
|
| Q |
601 |
ctgaatctcaagcgtcaaagattttagctggtctgggttttacaaaggacatgcagggccgtcctacaaaat |
672 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31717512 |
ctgaatctcaagcgtcaaagattttagctggtctgggttttacaaaggacatgcagggccgtcctacaaaat |
31717583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 3 - 672
Target Start/End: Complemental strand, 5946608 - 5945939
Alignment:
| Q |
3 |
gatttgaagccacttgaggtgtctattgctgaaaaagagttgaaaaagcgagaaaagaaagatattttagctgcccatgtggctgaacaggcaaagaagg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5946608 |
gatttgaagccacttgaggtgtctattgctgaaaaagagttgaaaaagcgtgaaaagaaagatattttagctgcccatgtggctgaacaggcaaagaaag |
5946509 |
T |
|
| Q |
103 |
aagctcttagggatgatcgtgatgctttcactgttgtaattggaagtcgggcttcagtgcttgatggagacgatggtgctgatgctaatgtcaaagatat |
202 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5946508 |
aagctcttcgggatgatcgtgatgctttcaccgttgtcattggaagtcgggcttcagtgcttgatggagacgatggtgctgatgctaatgtcaaagatat |
5946409 |
T |
|
| Q |
203 |
aacgatagaaaatttttctgtggctgctcggggtaaagaacttctgaagaatacttcagtgaagatatcccatggaaaacgttatggtttgattgggccg |
302 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
5946408 |
aacaatagaaaatttttctgtgtctgctcggggtaaagaacttctgaagaatacttctgtaaagatatctcatggaaaacggtatggtttgattgggccg |
5946309 |
T |
|
| Q |
303 |
aatggaatgggcaagtcaacgcttttgaagcttcttgcttggaggaagataccggtacctaagaatattgatgtccttctggttgagcaggaggtagttg |
402 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5946308 |
aatggaatgggcaagtcaacactattgaagcttcttgcttggaggaagataccggtgcctaagaatattgatgtccttctggttgagcaggaggtagttg |
5946209 |
T |
|
| Q |
403 |
gtgatgataaaacagcgcttgaagctgttgtttcagctaatgttgaacttattaaagttcgacaaaaagttgctgatctacaaaatatagcttctggtga |
502 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||||| |
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|
| T |
5946208 |
gcgatgataaaacagcgcttgaagctgttgtttcagctaatgttgaacttattaaaattcgacaagaagtttcttatctacaaaatgcagcttctggtga |
5946109 |
T |
|
| Q |
503 |
agaaggcatggataaagatcatactaatgaggaagaggatgcgggagaaaagctagcagagctgtatgaacaattacaactgatggggtctgatgctgct |
602 |
Q |
| |
|
|||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5946108 |
agaaggtgtggataaaaatgatactaacgaggaagaggatgcgggagaaaagctagcagagctgtatgaacaattacaactgatggggtctgatgctgct |
5946009 |
T |
|
| Q |
603 |
gaatctcaagcgtcaaagattttagctggtctgggttttacaaaggacatgcagggccgtcctacaaaat |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5946008 |
gaatctcaagcgtcaaagattttagctggtctgggttttacaaaggacatgcagggccgtcctacaaaat |
5945939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Complemental strand, 28619378 - 28618712
Alignment:
| Q |
9 |
aagccacttgaggtgtctattgctgaaaaagagttgaaaaagcgagaaaagaaagatattttagctgcccatgtggctgaacaggcaaagaaggaagctc |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |
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|
| T |
28619378 |
aagccacttgaggtgtctattgctgcaaaagagttgaaaaagcgtgaaaagaaagatattttagctgcccatttggctgaacaggcaaaaaaagaagctc |
28619279 |
T |
|
| Q |
109 |
ttagggatgatcgtgatgctttcactgttgtaattggaagtcgggcttcagtgcttgatggagacgatggtgctgatgctaatgtcaaagatataacgat |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
28619278 |
ttaaagatgatcgtgatgctttcactgttgtcattggaagtcgggcttcggttcttgatggagacgatggtgctaatgctaatgtcaaagatataatgat |
28619179 |
T |
|
| Q |
209 |
agaaaatttttctgtggctgctcggggtaaagaacttctgaagaatacttcagtgaagatatcccatggaaaacgttatggtttgattgggccgaatgga |
308 |
Q |
| |
|
||| || ||||||||| ||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||| |||||||||||||| |
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|
| T |
28619178 |
agataaattttctgtgtctgctcgtggcaaagaacttctgaagaatgcgtcagtgaagatatctcatggaaaacggtatggtttgcttgggccgaatgga |
28619079 |
T |
|
| Q |
309 |
atgggcaagtcaacgcttttgaagcttcttgcttggaggaagataccggtacctaagaatattgatgtccttctggttgagcaggaggtagttggtgatg |
408 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28619078 |
atgggcaagtcaacacttttgaagcttcttgcttggaggaagataccagtacctaagaatattgacgtccttctggttgagcaggaggtagttggtgatg |
28618979 |
T |
|
| Q |
409 |
ataaaacagcgcttgaag---ctgttgtttcagctaatgttgaacttattaaagttcgacaaaaagttgctgatctacaaaatatagcttctggtgaaga |
505 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
28618978 |
ataaaacagcgcttgaagccaccgttgtttcagctaatgttgaactagttaaagttcgtcaagaagttgctgatctacaaaatgcagcttcttgtgaaga |
28618879 |
T |
|
| Q |
506 |
aggcatggataaagatcatactaatgaggaagaggatgcgggagaaaagctagcagagctgtatgaacaattacaactgatggggtctgatgctgctgaa |
605 |
Q |
| |
|
||| ||||||||| ||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28618878 |
aggtgcagataaagatgatactaatgcggaagaggatgcaggagaaaagttagctgagctgtatgaacaattacaactgatggggtctgatgctgctgaa |
28618779 |
T |
|
| Q |
606 |
tctcaagcgtcaaagattttagctggtctgggttttacaaaggacatgcagggccgtcctacaaaat |
672 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28618778 |
tctcaagcatcaaagattttagctggtttgggttttacaaaggatatgcagggccgtcctacaaaat |
28618712 |
T |
|
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