View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_80 (Length: 240)
Name: NF11932_low_80
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_80 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 25623499 - 25623276
Alignment:
| Q |
17 |
aagttcgaccagaaaatttcaagtatcagtctaatgcatcactacgtgctaattgcgacttcctgtgttacacacatttctttcaattattaattattct |
116 |
Q |
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| T |
25623499 |
aagttcgaccagaaaatttgaagtatcagtctaatgcatcactacgtgctaattgcgacttcctgtgttacacacatttctttcaattattacttattct |
25623400 |
T |
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| Q |
117 |
actaaatatttacattttgttcatcagatgatataatattattgtttataaacctcctcaataaaatatcaatattcagtatgacaatacaagcatcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25623399 |
actaaatatttacattttgttcatcagatgatataatattattgtttataaacctcctcaataaaatatcaatattcagtatgacaatacaagcatcaaa |
25623300 |
T |
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| Q |
217 |
tgggaagtctaagctatgattttt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
25623299 |
tgggaagtctaagctatgattttt |
25623276 |
T |
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