View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_low_83 (Length: 239)

Name: NF11932_low_83
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_low_83
NF11932_low_83
[»] chr4 (3 HSPs)
chr4 (1-219)||(24983134-24983353)
chr4 (16-130)||(29551735-29551848)
chr4 (76-122)||(27059356-27059402)
[»] chr3 (1 HSPs)
chr3 (142-219)||(36338135-36338212)
[»] chr5 (2 HSPs)
chr5 (68-218)||(22415991-22416140)
chr5 (70-122)||(27689824-27689876)
[»] chr2 (2 HSPs)
chr2 (160-213)||(32121996-32122049)
chr2 (62-122)||(34415451-34415511)
[»] chr1 (1 HSPs)
chr1 (68-130)||(11355791-11355853)
[»] chr6 (1 HSPs)
chr6 (93-129)||(17520573-17520609)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 24983134 - 24983353
Alignment:
Q  1 cggatcaatggtcgaaagtgtccataattttttgttgtggtttagtacttattaaacacagacacattaatttataaaagttttagagcgtcgtggacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24983134 cggatcaatggtcgaaagtgtccataattttttgttgtggtttagtacttattaaacacagacacattaatttataaaagttttagagcgtcgtggacca 24983233  T
Q  101 cagtaactgtcggtgcaatgtgaatcacat-nnnnnnnntcatgtacctaagagttttggattttataattcgaaagttatctcaccctacaaaggacaa 199  Q
    ||| |||||||||||||||||| |||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24983234 cagaaactgtcggtgcaatgtgcatcacataaaaaaaaatcatgtacctaagagttttggatcttataattcgaaagttatctcaccctacaaagtacaa 24983333  T
Q  200 aatttaacacattattgaac 219  Q
    ||||||||||||||||||||    
T  24983334 aatttaacacattattgaac 24983353  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 29551848 - 29551735
Alignment:
Q  16 aagtgtccataattttttgttgtggtttagtacttattaaacacagacacattaatttataaaagttttagagcgtcgtggaccacagtaactgtcggtg 115  Q
    |||||||||| |||||||| ||| ||||| | ||||| ||| ||| ||||| |||||||| |||||||||| |||||||| ||||||  |||||||||||    
T  29551848 aagtgtccatgattttttggtgtagtttactccttatgaaa-acatacacactaatttattaaagttttagggcgtcgtgaaccacaaaaactgtcggtg 29551750  T
Q  116 caatgtgaatcacat 130  Q
    |||| |||| |||||    
T  29551749 caatatgaaccacat 29551735  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 27059402 - 27059356
Alignment:
Q  76 aaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtg 122  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||    
T  27059402 aaaagtttttgtgcgtcgtggaccacataaactgtcggtgcaatgtg 27059356  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 36338135 - 36338212
Alignment:
Q  142 tgtacctaagagttttggattttataattcgaaagttatctcaccctacaaaggacaaaatttaacacattattgaac 219  Q
    |||| |||| |||||||||||||||||| ||||||||  |||||||||||||| || ||||||||||| |||||||||    
T  36338135 tgtatctaaaagttttggattttataatgcgaaagttccctcaccctacaaagtacgaaatttaacactttattgaac 36338212  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 22416140 - 22415991
Alignment:
Q  68 taatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtgaatcacatnnnnnnnntcatgtacctaagagttttggattttata 167  Q
    ||||||||| ||||||||| |||| || |||||||  |||||||||||||||||| | |||||        || ||||| |||||||||  | |||||||    
T  22416140 taatttatagaagttttagggcgttgttgaccacataaactgtcggtgcaatgtggaccacat-aaataaatcttgtacataagagtttcaggttttata 22416042  T
Q  168 attcgaaagttatctcaccctacaaaggacaaaatttaacacattattgaa 218  Q
    || |||||  |  |||||||||||||| ||||| |||||| ||||||||||    
T  22416041 atccgaaatatccctcaccctacaaagtacaaagtttaactcattattgaa 22415991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 27689876 - 27689824
Alignment:
Q  70 atttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtg 122  Q
    ||||||| ||||||| | |||||||||||||||  ||||||| ||||||||||    
T  27689876 atttatagaagtttttgtgcgtcgtggaccacaaaaactgtcagtgcaatgtg 27689824  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 32122049 - 32121996
Alignment:
Q  160 attttataattcgaaagttatctcaccctacaaaggacaaaatttaacacatta 213  Q
    ||||||||||| |||||||   ||||||||||||| ||||||||||||||||||    
T  32122049 attttataatttgaaagttccttcaccctacaaagtacaaaatttaacacatta 32121996  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 34415511 - 34415451
Alignment:
Q  62 acacattaatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtg 122  Q
    ||||| ||||||||| ||||||| | |||||||||||||||| || ||| |||||||||||    
T  34415511 acacactaatttatagaagtttttgtgcgtcgtggaccacagaaattgttggtgcaatgtg 34415451  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 11355791 - 11355853
Alignment:
Q  68 taatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtgaatcacat 130  Q
    ||||||||| ||||||||| || ||||||||||||  || |||||||| |||||| |||||||    
T  11355791 taatttatataagttttagggcatcgtggaccacataaaatgtcggtgtaatgtggatcacat 11355853  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 17520573 - 17520609
Alignment:
Q  93 gtggaccacagtaactgtcggtgcaatgtgaatcaca 129  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  17520573 gtggaccacagaaactgtcggtgcaatgtggatcaca 17520609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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