View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_84 (Length: 238)
Name: NF11932_low_84
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44661126 - 44660904
Alignment:
| Q |
1 |
tgattaatataaacatattttactaaaaacaatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataagcaaa |
100 |
Q |
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| T |
44661126 |
tgattaatataaacatattttactaaaaacaatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataagcaaa |
44661027 |
T |
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| Q |
101 |
atgaagaaaaatccaaagcgtgtcttgttcatgtttactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtatttggcac |
200 |
Q |
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| T |
44661026 |
atgaagaaaaatccaaagcgtgtcttgttcatgattactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtatttggcac |
44660927 |
T |
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| Q |
201 |
tcgtatctatttatagaggtaga |
223 |
Q |
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| T |
44660926 |
tcgtatctatttatagaggtaga |
44660904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 44650788 - 44650857
Alignment:
| Q |
69 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatgtttac |
138 |
Q |
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| T |
44650788 |
aagacttactagaagcaaggagaataaacaaaatgaataaaaccccaaagcgtgtcttgttcatgattac |
44650857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 44653915 - 44653851
Alignment:
| Q |
69 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatg |
133 |
Q |
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| T |
44653915 |
aagacttaccaaaagtaagaagaataagtagaatgaagaaaaatccaaagcgagctttgttcatg |
44653851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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