View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_87 (Length: 238)
Name: NF11932_low_87
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 15826625 - 15826732
Alignment:
| Q |
4 |
aaacttgtaaaaatagaggtttgtaagatttaaaaagcacaactcttatatggaagctatagcttccaaatgagagctgcatctttctctatcttgttca |
103 |
Q |
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| T |
15826625 |
aaacttgtaaagatagaggtttgtaagatttaaaaagtacaactcttatatggaagttatagcttctaaatgagagctgcatctttctctatcttgttca |
15826724 |
T |
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| Q |
104 |
tgtaattg |
111 |
Q |
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| T |
15826725 |
tgtaattg |
15826732 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 15826764 - 15826837
Alignment:
| Q |
145 |
tgggagtgcgaacacttcctttattgagagttgcctcccttaagtgcttctttattgtcattagtttgacaaat |
218 |
Q |
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| T |
15826764 |
tgggaatgcgaacacttcctttattgagagttgcctcccttaagtgcttctttattgtcattagtttgacaaat |
15826837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 32165120 - 32165052
Alignment:
| Q |
149 |
agtgcgaacacttcctttattgagagttgcctcccttaagtgcttctttattgtcattagtttgacaaa |
217 |
Q |
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| T |
32165120 |
agtgggaacactccttttattgagagttgcatcccttgagcgcttctttattgtcattagcttgacaaa |
32165052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 21628585 - 21628655
Alignment:
| Q |
149 |
agtgcgaacacttcctttattgagagttgcctcccttaagtgcttctttattgtcattagtttgacaaatc |
219 |
Q |
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| T |
21628585 |
agtgtgaaccctccctttattgagggttgcctcccttaagcgcttctttattgtcattaatttaacaaatc |
21628655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 21674875 - 21674945
Alignment:
| Q |
149 |
agtgcgaacacttcctttattgagagttgcctcccttaagtgcttctttattgtcattagtttgacaaatc |
219 |
Q |
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| T |
21674875 |
agtgtgaacactccatttattgagtgttgcatccgttaagcgcttctttattatcattagcttaacaaatc |
21674945 |
T |
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