View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_low_89 (Length: 237)
Name: NF11932_low_89
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_89 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4769812 - 4769591
Alignment:
| Q |
1 |
aaaaattagacaaaatagtgagaccaaaagtgcatttaaattttaatattatgctaagtaataaatagtagttttttgttcttgatgtggtggatagcag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769812 |
aaaaattagacaaaatagtgagactaaaagtgcatttaaatttgaatactatgctaagtaataaatagtagttttttgttcttgatgtggtggatagcag |
4769713 |
T |
|
| Q |
101 |
aattgnnnnnnnatcctgcaggcaaagannnnnnnattgaattgcaaacacctctaagtcgaagggctgaagctgccacaactactattgttattattat |
200 |
Q |
| |
|
||||| |||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4769712 |
aattgtttttttatcctgcaggcaaaga-ttttttactaaattgcaaacacctctaagtcgaagggttgaagctgccacaactactattgttattattat |
4769614 |
T |
|
| Q |
201 |
ttctgttgctagtatcatctatc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4769613 |
ttctgttgctagtatcatctatc |
4769591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University