View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_92 (Length: 231)
Name: NF11932_low_92
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 2620395 - 2620197
Alignment:
| Q |
18 |
atgagaaagaactgattaataaactttgtatattcgcattgtggcaaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaa |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2620395 |
atgagaaagaactgatcgataaactttgtatattcgcattgtggcaaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaa |
2620296 |
T |
|
| Q |
118 |
attatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2620295 |
attatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaa |
2620197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 2572410 - 2572551
Alignment:
| Q |
75 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2572410 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctc |
2572509 |
T |
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| Q |
175 |
tcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2572510 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaa |
2572551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 2433081 - 2432922
Alignment:
| Q |
57 |
tgtggcaaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttc |
156 |
Q |
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|||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2433081 |
tgtgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttggcagcatccacaatttc |
2432982 |
T |
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| Q |
157 |
ttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2432981 |
ttcatatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaa |
2432922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 2448930 - 2448789
Alignment:
| Q |
75 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
174 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2448930 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaacatcttcatatgtagcatcctc |
2448831 |
T |
|
| Q |
175 |
tcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2448830 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaa |
2448789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 2677228 - 2677387
Alignment:
| Q |
57 |
tgtggcaaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttc |
156 |
Q |
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|
|||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
2677228 |
tgtgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacgatttc |
2677327 |
T |
|
| Q |
157 |
ttcatatgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
2677328 |
ttcatatgtagcatcctctcttccaaaaagtatattctccataatgcttgttgcaaacaa |
2677387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 2586661 - 2586507
Alignment:
| Q |
62 |
caaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcat |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
2586661 |
caaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacaacatcttcaa |
2586562 |
T |
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| Q |
162 |
atgtagcattctctcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
2586561 |
atgtagcatcctctcttccaaaaagtatattctccttgatgcttgttgcaaacaa |
2586507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 2599989 - 2600129
Alignment:
| Q |
76 |
actaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctct |
175 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
2599989 |
actaacctgagtatcatatacttgtggcaacaatgaaatgaaattatgagcattagaagttttagcagcattcacaatttcttcatatgtagcatcctct |
2600088 |
T |
|
| Q |
176 |
cttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
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| T |
2600089 |
cttccaaaaagtatattctccttaatgcttgttgcaaacaa |
2600129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 2644808 - 2644949
Alignment:
| Q |
75 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
174 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||| |
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| T |
2644808 |
cactaacctgcgtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaaactttagcagcatctacaacatcttcatatgtagcatcctc |
2644907 |
T |
|
| Q |
175 |
tcttccaaaaagtatattctccttaatacttgttgcaaacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2644908 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaa |
2644949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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