View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_94 (Length: 229)
Name: NF11932_low_94
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_94 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 30183232 - 30183012
Alignment:
| Q |
6 |
accctatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgtatttcaatcatgcaattaggttttattccat |
105 |
Q |
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| T |
30183232 |
accctatctatctattttcactttcattacagtaaattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattaggttttattccat |
30183133 |
T |
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| Q |
106 |
ttttgctttgttgttttggtttacagaataaaaaagaaaggaagaaggtgagggatgtggggattttgaagaaagatcctgaccaactcaagaaacagat |
205 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30183132 |
ttttgctttgttgttttggtttacagaattaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactcaagaaacagat |
30183033 |
T |
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| Q |
206 |
tgaaaacttggaaatgatgag |
226 |
Q |
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||||||||||||||||||||| |
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| T |
30183032 |
tgaaaacttggaaatgatgag |
30183012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 44431074 - 44430940
Alignment:
| Q |
95 |
ttttattccatttttgctttgttgttttggtttacagaataaaaaagaaaggaagaaggtgagggatgtggggattttgaagaaagatcctgaccaactc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44431074 |
ttttattccatttttgctttgttgttttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactc |
44430975 |
T |
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| Q |
195 |
aagaaacagattgaaaacttggaaatgatgagtaa |
229 |
Q |
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| T |
44430974 |
aagaaacagattgaaaacttggaaatgatgagtaa |
44430940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 44441471 - 44441362
Alignment:
| Q |
120 |
tttggtttacagaataaaaaagaaaggaagaaggtgagggatgtggggattttgaagaaagatcctgaccaactcaagaaacagattgaaaacttggaaa |
219 |
Q |
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| T |
44441471 |
tttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactcaagaagcagattgagaacttggaaa |
44441372 |
T |
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| Q |
220 |
tgatgagtaa |
229 |
Q |
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| T |
44441371 |
tgatgagtaa |
44441362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 44431202 - 44431114
Alignment:
| Q |
9 |
ctatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgtatttcaatcatgcaattaggtttt |
98 |
Q |
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| T |
44431202 |
ctatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaatcatgcaattaggtttt |
44431114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 44441650 - 44441566
Alignment:
| Q |
9 |
ctatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgtatttcaatcatgcaattagg |
94 |
Q |
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| T |
44441650 |
ctatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaattatgcaaatagg |
44441566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 6284 - 6175
Alignment:
| Q |
120 |
tttggtttacagaataaaaaagaaaggaagaaggtgagggatgtggggattttgaagaaagatcctgaccaactcaagaaacagattgaaaacttggaaa |
219 |
Q |
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| T |
6284 |
tttggtttacagaataaaaaagaaagaaagaaggtgagggatgtggggattttgaagaaagatcctgatcaactcaagaagcagattgagaacttggaaa |
6185 |
T |
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| Q |
220 |
tgatgagtaa |
229 |
Q |
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| T |
6184 |
tgatgagtaa |
6175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 6463 - 6379
Alignment:
| Q |
9 |
ctatctatctattttcactttcattacagttaattgaaattttgagtgtttattttgcaaaattgtatttcaatcatgcaattagg |
94 |
Q |
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||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
6463 |
ctatctatctattttcactttcattgcaat-aattgaaattttgagtgtttattttgcaaaattgaatttcaattatgcaaatagg |
6379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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