View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_96 (Length: 227)
Name: NF11932_low_96
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 43212928 - 43213123
Alignment:
| Q |
15 |
tatcaaaggataaagttatctcatgtattaagatgaattgaacataaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcaccta |
114 |
Q |
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| T |
43212928 |
tatcaaaggataaagttatctcatgtattaagatgaattgaacataaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcaccta |
43213027 |
T |
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| Q |
115 |
gaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaac |
210 |
Q |
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| T |
43213028 |
gaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaac |
43213123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 41650781 - 41650643
Alignment:
| Q |
60 |
aaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttc |
159 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||| |
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| T |
41650781 |
aaaaaccatacttgtaactctttttcatgttccttgagaatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttc |
41650682 |
T |
|
| Q |
160 |
caggtactttactcttatgctcccactccaccaattcct |
198 |
Q |
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| T |
41650681 |
caggtactttactcttatgctcccactccaccaattcct |
41650643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 41655140 - 41654992
Alignment:
| Q |
59 |
taaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatcttt |
158 |
Q |
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| T |
41655140 |
taaaaaccatacctgtaactgtttttcatgttccttgaggatcttagcagcaccaagaagcatagcaacatgagcatcatggccacatgcatgcatcttt |
41655041 |
T |
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| Q |
159 |
ccaggtactttactcttatgctcccactccaccaattcctgaagttaac |
207 |
Q |
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| T |
41655040 |
ccaggcactttactcttatgctcccactccaccaattcctaaggttaac |
41654992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 43206041 - 43206176
Alignment:
| Q |
63 |
aaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccag |
162 |
Q |
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| T |
43206041 |
aaccatacatgtaaatgtttttcacggtccttgagaatcttagcagcaccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttccag |
43206140 |
T |
|
| Q |
163 |
gtactttactcttatgctcccactccaccaattcct |
198 |
Q |
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| T |
43206141 |
gtactttacttttatgctcccactccaccatttcct |
43206176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 43223851 - 43223984
Alignment:
| Q |
74 |
taactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactttactc |
173 |
Q |
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||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
43223851 |
taactgtttttcatgttccttgaggatcttagcagcaccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcactttactc |
43223950 |
T |
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| Q |
174 |
ttatgctcccactccaccaattcctgaagttaac |
207 |
Q |
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||||||||||||||||||||||||| | |||||| |
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| T |
43223951 |
ttatgctcccactccaccaattcctaaggttaac |
43223984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 43227370 - 43227508
Alignment:
| Q |
60 |
aaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttc |
159 |
Q |
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|
||||||||||| |||||||||||||| |||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43227370 |
aaaaaccatacttgtaactctttttcgtgctgcttgaggatctttgcagcaccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttc |
43227469 |
T |
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| Q |
160 |
caggtactttactcttatgctcccactccaccaattcct |
198 |
Q |
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|||||||||| || ||||||||||| |||| |||||||| |
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| T |
43227470 |
caggtactttgcttttatgctcccattccaacaattcct |
43227508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 31558638 - 31558552
Alignment:
| Q |
72 |
tgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatcttt |
158 |
Q |
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|||| |||||||||||| | || |||||||| |||||||| || ||||| | ||||||||||||||||||||| ||||||||||| |
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| T |
31558638 |
tgtatctctttttcatgttgtttaagaatctttgcagcaccaagtagcatggtaacatgagcatcatgaccacacgcatgcatcttt |
31558552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 5072673 - 5072802
Alignment:
| Q |
69 |
acctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactt |
168 |
Q |
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||||||| |||||||||||||| |||||||||||| |||||||| || ||||| | ||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
5072673 |
acctgtatctctttttcatgctgcttgagaatctttgcagcaccaagtagcatggtaacatgagcatcatgaccacacgcatgcatctttccaggtacct |
5072772 |
T |
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| Q |
169 |
tactcttatgctcccactccaccaattcct |
198 |
Q |
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| T |
5072773 |
tactcctgtgctcccactccaccatttcct |
5072802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 34595162 - 34595251
Alignment:
| Q |
72 |
tgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttcca |
161 |
Q |
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|||| |||||||||||| | ||||||||||| | |||||| || ||||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
34595162 |
tgtatctctttttcatgttgtttgagaatctttgtagcaccaagtagcatgacaacatgagcatcacgaccacactcatgcatctttcca |
34595251 |
T |
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