View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11933_high_15 (Length: 241)

Name: NF11933_high_15
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11933_high_15
NF11933_high_15
[»] chr1 (3 HSPs)
chr1 (1-240)||(13867881-13868120)
chr1 (133-240)||(33150830-33150937)
chr1 (142-240)||(26510564-26510662)
[»] chr7 (2 HSPs)
chr7 (1-240)||(35213468-35213707)
chr7 (7-240)||(26855548-26855781)
[»] chr4 (2 HSPs)
chr4 (1-240)||(43516796-43517035)
chr4 (7-240)||(20543920-20544153)
[»] chr3 (2 HSPs)
chr3 (1-229)||(40513772-40514000)
chr3 (98-240)||(34829254-34829396)
[»] chr2 (3 HSPs)
chr2 (7-240)||(11196186-11196419)
chr2 (7-212)||(32624217-32624422)
chr2 (133-212)||(144222-144301)
[»] chr5 (2 HSPs)
chr5 (137-240)||(21368120-21368223)
chr5 (198-240)||(979350-979392)
[»] chr6 (1 HSPs)
chr6 (133-212)||(14687206-14687285)
[»] chr8 (1 HSPs)
chr8 (184-240)||(25900869-25900925)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13867881 - 13868120
Alignment:
Q  1 cttaaagttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgt 100  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||| ||||||    
T  13867881 cttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagcattgt 13867980  T
Q  101 gtgttactgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaat 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13867981 gtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattggaat 13868080  T
Q  201 gtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13868081 gtcaggtgctgatccccttaatattgatgaccatttcatt 13868120  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 33150937 - 33150830
Alignment:
Q  133 tctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtcc 232  Q
    |||||| ||||||| || || || ||||||||  | ||||||||| || |||||| |||||| |||||||||||||| || |||||||||||||||| ||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattgatgacc 33150838  T
Q  233 atctcatt 240  Q
    || |||||    
T  33150837 atttcatt 33150830  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 26510564 - 26510662
Alignment:
Q  142 tttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    ||||| |||||||| | ||| ||||| |||||||||  | |||||| |||||| ||||||||||||| ||| ||| ||||||| |||| |||| |||||    
T  26510564 tttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttgacccctttaatatcgatgaccatttcatt 26510662  T

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Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35213707 - 35213468
Alignment:
Q  1 cttaaagttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgt 100  Q
    ||||| |||| |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||| ||||||    
T  35213707 cttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcagcattgt 35213608  T
Q  101 gtgttactgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaat 200  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  35213607 gtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattggaat 35213508  T
Q  201 gtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    |||||||| |||||||||||||||||||| |||| |||||    
T  35213507 gtcaggtgttgatccccttaatattgatgaccatttcatt 35213468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 26855781 - 26855548
Alignment:
Q  7 gttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgtgtgtta 106  Q
    |||| |||||||| |||| |||| || || ||||||||||||| ||||||||  ||| |  |||||||||| |||    ||||||| |   ||||||| |    
T  26855781 gtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgaggcttgtatgtgtgtca 26855682  T
Q  107 ctgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcagg 206  Q
    | ||||| || |||| |||| ||   |||||||| ||||| |||||  | ||||||||| ||||||||||| || |||||| || ||| |||||||||||    
T  26855681 cagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtctttgatcggaatgtcagg 26855582  T
Q  207 tgctgatccccttaatattgatgtccatctcatt 240  Q
    |||||| ||  |||||||| ||| |||| |||||    
T  26855581 tgctgacccttttaatattaatgaccatttcatt 26855548  T

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Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43516796 - 43517035
Alignment:
Q  1 cttaaagttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgt 100  Q
    ||||| |||| |||||||| ||||||||||||| ||||||||||||||| ||||||||  || |||||||||||||||||||||||||||| | ||||||    
T  43516796 cttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagcattgt 43516895  T
Q  101 gtgttactgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaat 200  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  43516896 gtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattggaat 43516995  T
Q  201 gtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  43516996 gtcaggtgctgatccccttaatattgatgaccatttcatt 43517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 20544153 - 20543920
Alignment:
Q  7 gttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgtgtgtta 106  Q
    |||| |||||||  |||| |||| || || ||||||||||||| |||||| |  |||||  |||||||||| |||   |||||| ||    ||||||| |    
T  20544153 gtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaagtatgtgtgtca 20544054  T
Q  107 ctgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcagg 206  Q
    | ||||| || |||| |||| ||   |||||| ||||||| || || || ||||||||| | ||||||||| || |||||| |||||| |||||||||||    
T  20544053 cagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcagg 20543954  T
Q  207 tgctgatccccttaatattgatgtccatctcatt 240  Q
    |||||| ||| |||||||||||| |||| |||||    
T  20543953 tgctgacccctttaatattgatgaccatttcatt 20543920  T

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Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40513772 - 40514000
Alignment:
Q  1 cttaaagttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgt 100  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||||||| || |||||| ||||||    
T  40513772 cttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgaggcagcattgt 40513871  T
Q  101 gtgttactgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaat 200  Q
    ||||| | ||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  40513872 gtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattggaat 40513971  T
Q  201 gtcaggtgctgatccccttaatattgatg 229  Q
    |||| ||||||||||||||||||||||||    
T  40513972 gtcatgtgctgatccccttaatattgatg 40514000  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 34829396 - 34829254
Alignment:
Q  98 tgtgtgttactgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgg 197  Q
    |||||||||| ||||| |||| || ||||||||   ||||  | ||||| |||||||| |||||  |||| |||||||||  | |||||| |||||| ||    
T  34829396 tgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcgg 34829297  T
Q  198 aatgtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    ||||||||||| | | ||| |||||||||||| |||| |||||    
T  34829296 aatgtcaggtgttaacccctttaatattgatgaccatttcatt 34829254  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 11196419 - 11196186
Alignment:
Q  7 gttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgtgtgtta 106  Q
    |||| |||||||  |||| ||||||| || ||||||||||||| |||||| |  |||||  |||||||||| |||  ||||||||||    |||||||||    
T  11196419 gtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagttatgtgtgtta 11196320  T
Q  107 ctgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcagg 206  Q
    | ||||| || |||||||||  ||  |||||| ||||||| || || || ||||||||| | ||||||||| || |||||| ||||||  ||||||||||    
T  11196319 cagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcagaatgtcagg 11196220  T
Q  207 tgctgatccccttaatattgatgtccatctcatt 240  Q
    ||  || | |||||||||||||| |||| |||||    
T  11196219 tgtcgacctccttaatattgatgaccatttcatt 11196186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 32624422 - 32624217
Alignment:
Q  7 gttttcatttttggttggagattgttacgggataggttgccgaataagaatcgccttctccggcgtggcatcatcgttggcgaggcatcattgtgtgtta 106  Q
    |||| |||||||| |||| |||| ||  | ||||||||||||| |||||| |  |||||  |||||||||| |||   ||||||||||   ||||||| |    
T  32624422 gtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaggcatgtatgtgtgtca 32624323  T
Q  107 ctgggtgtggcatggcagagtctgtttctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcagg 206  Q
    | || || || |||| |||| ||   |||||| ||||||| ||||| || ||||||||| | ||||||||| || |||||| ||||||||||||||||||    
T  32624322 caggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattggaatgtcagg 32624223  T
Q  207 tgctga 212  Q
    ||||||    
T  32624222 tgctga 32624217  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 144222 - 144301
Alignment:
Q  133 tctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 212  Q
    |||||||| ||||| |||||  | ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
T  144222 tctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 144301  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 21368120 - 21368223
Alignment:
Q  137 atctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatct 236  Q
    |||| ||||| ||||| || ||||||||| | ||||||||| || |||||| |||||| ||||||||||||||||| || ||||||||||||| |||| |    
T  21368120 atctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcaggtgctgaccctcttaatattgatgaccattt 21368219  T
Q  237 catt 240  Q
    ||||    
T  21368220 catt 21368223  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 979350 - 979392
Alignment:
Q  198 aatgtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
T  979350 aatgtcaggtggtgatccccttaatattgatgaccatttcatt 979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 14687206 - 14687285
Alignment:
Q  133 tctcatctatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 212  Q
    |||||||| ||||| |||||  | ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
T  14687206 tctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 14687285  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 25900925 - 25900869
Alignment:
Q  184 aggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 240  Q
    |||| |||||| ||||||||||||| ||| ||| |||||||||||| |||| |||||    
T  25900925 aggtcttggatcggaatgtcaggtgttgacccctttaatattgatgaccatttcatt 25900869  T

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