View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11933_high_2 (Length: 633)
Name: NF11933_high_2
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 145 - 424
Target Start/End: Complemental strand, 30228583 - 30228304
Alignment:
| Q |
145 |
aaacaagatatagcaatttctttcnnnnnnncaagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagca |
244 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30228583 |
aaacaagatatagcaatttctttcaaaaaaacaagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagca |
30228484 |
T |
|
| Q |
245 |
tataaatttacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatatcggtcggcaagggatgtaacaccttatatca |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30228483 |
tataaatttacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatctcggtcggcaagggatgtaacaccttatatca |
30228384 |
T |
|
| Q |
345 |
atagggaaattatggaattttaaatcccaaatcagatgaaattactcagtgaagcacctgagttgttagattctttggaa |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30228383 |
atagggaaattatggaattttaaatcccaaatcagatgaaattactcggtgaagcacctgagttgttagattctttggaa |
30228304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 458 - 615
Target Start/End: Complemental strand, 30228291 - 30228132
Alignment:
| Q |
458 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacac-- |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30228291 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacacat |
30228192 |
T |
|
| Q |
556 |
atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaatcaacaatgat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30228191 |
atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaaccaacaatgat |
30228132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 30228736 - 30228588
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatatccataatgaagagacgnn |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30228736 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaaaccaacaaaatcaaatcagaaacaatatccataatgaagagacgac |
30228637 |
T |
|
| Q |
120 |
nnnnnncacaattcattggaaagttaaacaagatatagcaatttctttc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30228636 |
aaaaaccacaattcattggaaagttaaacaagatatagcaatttctttc |
30228588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 30230928 - 30230831
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatatccataatgaagagacg |
117 |
Q |
| |
|
||||||| | ||||||||||| |||||| ||||||||||||||| |||||| ||||||||||| |||||||||| ||| |||||||| ||||||||| |
|
|
| T |
30230928 |
aatcggtgccgtcaggaaattctgtctcgccatcactcatctgtattacagccacccaacaaaaccaaatcagaaccaacatccataacgaagagacg |
30230831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 30230655 - 30230600
Alignment:
| Q |
253 |
tacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaa |
308 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30230655 |
tacatataccaaagagtgaccagtcatcaaagaaggaactgcatgatgctatacaa |
30230600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 30230799 - 30230729
Alignment:
| Q |
176 |
caagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagcata |
246 |
Q |
| |
|
|||| |||| |||||||||||| || ||||||||||| ||| ||||| |||| |||||||||||||||||| |
|
|
| T |
30230799 |
caaggtatatcaactagaaagcaggtccatcaaggtgcaacttttcaacaaaatcaacacaagaaagcata |
30230729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 253 - 615
Target Start/End: Complemental strand, 34688069 - 34687721
Alignment:
| Q |
253 |
tacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatatcggtcggcaagggatgtaacaccttatatcaatagggaa |
352 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34688069 |
tacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgt----ctcggcaagggatgtaacaccttatatcaatagggaa |
34687974 |
T |
|
| Q |
353 |
attatggaa--ttttaaatcccaaatcagatgaaattactcagtgaagcacctgagttgttagattctttggaattcattgtagttgcgaaacatacata |
450 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
34687973 |
attatggaatgttttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatc |
34687874 |
T |
|
| Q |
451 |
caactttaattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattt |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
34687873 |
taactttaattaattcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattt |
34687774 |
T |
|
| Q |
551 |
tacacatacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaatcaacaatgat |
615 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34687773 |
tacaca------------atcaatcatataagaaagaaatttcttaatctcaaatcaacaatgat |
34687721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 34688209 - 34688134
Alignment:
| Q |
176 |
caagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagcatataaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
34688209 |
caagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaacacaagaaagcatataaat |
34688134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 34688315 - 34688234
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatat |
101 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
34688315 |
aatcagtactgtcaggaaattctgtctcatcatcactcatctgtattacagccatccaacaaaaccaaatcagaaacaatat |
34688234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 253 - 548
Target Start/End: Complemental strand, 26986010 - 26985717
Alignment:
| Q |
253 |
tacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatatcggtcggcaagggatgtaacaccttatatcaatagggaa |
352 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26986010 |
tacatataccaaaaagcgattagtcatcaaagaaggaactgcatgatgctatacaatgt----ctcggcaagggatgtaacaccttatatcaatagggaa |
26985915 |
T |
|
| Q |
353 |
attatggaa--ttttaaatcccaaatcagatgaaattactcagtgaagcacctgagttgttagattctttggaattcattgtagttgcgaaacatacata |
450 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
26985914 |
attatggaatgttttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatc |
26985815 |
T |
|
| Q |
451 |
caactttaattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaat |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
26985814 |
taactttaattaattcatgggataaactatcagatgaaattcaatattaattcaaagtagtttcaatgaatatgaggaatttcaatgagaagaggaat |
26985717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 253 - 536
Target Start/End: Original strand, 27079361 - 27079641
Alignment:
| Q |
253 |
tacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatatcggtcggcaagggatgtaacaccttatatcaatagggaa |
352 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | | || | ||||||||||||||||| |||||||||||| |
|
|
| T |
27079361 |
tacatataccaaaaatcgatcagtcatcaaagaaggaacttcatgatgctatacaatgtcttgg----cgagggatgtaacaccttaaatcaatagggaa |
27079456 |
T |
|
| Q |
353 |
attatggaattt-taaatcccaaatcagatgaaattactcagtgaagcacctgagttgttagattctttggaattcattgtagttgcgaaacatacatac |
451 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||| || ||||||| |||||||||| | |
|
|
| T |
27079457 |
attatggaatgcgtaagtcccaaatcaaatgaaattactgggtgaagtacctaagttgttagattctttggaattaatcgtagttggcaaacatacatcc |
27079556 |
T |
|
| Q |
452 |
aactttaattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaat |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
27079557 |
aactttaattaattcatgggataaactatcaaatgaaattcaatattaattcaaagtactttcaatgaagagaaggattttcaat |
27079641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 278 - 499
Target Start/End: Complemental strand, 27025819 - 27025601
Alignment:
| Q |
278 |
atcaaagaaggaactgcatgatgctatacaatatatcggtcggcaagggatgtaacaccttatatcaatagggaaattatggaat-tttaaatcccaaat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||| |
|
|
| T |
27025819 |
atcaaagaaggaactgcatgatgctatacaatgt----ctcggcaagggatgtaacaccttatatcaataggaaaattatggaatgtgtaagtcccaaat |
27025724 |
T |
|
| Q |
377 |
cagatgaaattactcagtgaagcacctgagttgttagattctttggaattcattgtagttgcgaaacatacatacaactttaattaattcatgggataaa |
476 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||||||| || ||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27025723 |
cagatgaaattactcggtgaagcacctaagttgttagattcgttggaattaatcgtagttggctaacatacagccaactttaattaattcatgggctaaa |
27025624 |
T |
|
| Q |
477 |
ctatcagatgaaattcagtatta |
499 |
Q |
| |
|
|| ||| |||||||||| ||||| |
|
|
| T |
27025623 |
ctgtcaaatgaaattcaatatta |
27025601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 27079107 - 27079197
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatatccataatga |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27079107 |
aatcggtactgtcaggaaattctgtctcatcatgactcatctgtactacagccacccaacaaaaccaaatcagaaacaatatccataatga |
27079197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 26986151 - 26986076
Alignment:
| Q |
176 |
caagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagcatataaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
26986151 |
caagatatagcaactagaaagctggcccatcaaggtgcaacttttcaacaaagtcaacacaagaaagcatataaat |
26986076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 27025957 - 27025882
Alignment:
| Q |
176 |
caagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagcatataaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
27025957 |
caagatatagcaactagaaagctggcccatcaaggtgcaacctctcaacaaagtcaacacaagaaagcatataaat |
27025882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 26986257 - 26986176
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatat |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
26986257 |
aatcggtactgtcaggaaattctgtctcatcatcactcatctgtattacagccatccaacaaaaccaaatcagaaacaatat |
26986176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 27026063 - 27025966
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatatccat-aatgaagagac |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||| || ||||||||||| |
|
|
| T |
27026063 |
aatcggtactgtcaggaaattctgtctcatcatcactcatctgtattacagccatccaacaaaaccaaattagaaacaatatcgataaatgaagagac |
27025966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 27079211 - 27079286
Alignment:
| Q |
176 |
caagatatagcaactagaaagctggcccatcaaggtgtaacctttcagcaaagtcaacacaagaaagcatataaat |
251 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
27079211 |
caagatatagcaactagaaaactggcccatcaaggtgcaacctttcaacaaaatcaacacaagaaagcttataaat |
27079286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 615
Target Start/End: Complemental strand, 26985718 - 26985672
Alignment:
| Q |
569 |
atcaatcatataagaaagaaatttcttaatctcaaatcaacaatgat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26985718 |
atcaatcatataagaaagaaatttcttaatctcaaatcaacaatgat |
26985672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 27101413 - 27101509
Alignment:
| Q |
20 |
aatcggtactgtcaggaaattttgtctcatcatcactcatctgtactacagcaacccaacaaaaacaaatcagaaacaatatccat-aatgaagagac |
116 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| |||| |||||| | ||||| ||| |||||||| | ||||||| || ||||||||||| |
|
|
| T |
27101413 |
aatcggtactgtcagtaaattctgtctcatcatcactcatatgtattacagccatccaac-aaaccaaatcagtagcaatatcgataaatgaagagac |
27101509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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