View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11933_high_3 (Length: 494)
Name: NF11933_high_3
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 52853831 - 52854283
Alignment:
| Q |
20 |
cgatatgcatgctcactgttgtgaagacgagcccacaaggcagctttccaagttgttgaccacccaggaccttcatctcctgtaacataaagcaagaaat |
119 |
Q |
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| T |
52853831 |
cgatatgcatgctcactgttgtgaagacgagcccacaatgcagctttccaagttgttgaccacccgggaccttcatctcctgtaacataacgcaagaaat |
52853930 |
T |
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| Q |
120 |
gtgattgctgttaagatatattatttctagtattaaacctaaaaagatacaaccttaggtcattttggtttacaaggttgtacatgaacatgaacgaggg |
219 |
Q |
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| T |
52853931 |
gtgattgctgttaagatatattatttctagtattaaacctaaaaagatacaaccttaggtcattttggtttacaaggttgtacatgaacatgaacgaggg |
52854030 |
T |
|
| Q |
220 |
aattcctaatttgagaatgtagtatatttgttgtgatcattttctacattacccggaggttttaatgaataaagtgacttaactattaaaatcaatagac |
319 |
Q |
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| T |
52854031 |
aattcctaatttgagaatgtagtatatttgttgtgattattttctacattacccggaggttttaatgaataaagtgacttaactattaaaatcaatagac |
52854130 |
T |
|
| Q |
320 |
gtagtactattacctaaaataactactatgtcggggacaaaaatcagaattaaagctcaagtaaaagacctcttttaattagactataatttacagcttt |
419 |
Q |
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| T |
52854131 |
gtagtactattacctaaaataactactatgtcggggacaaaaatcagaattaaagctcaagtaaaagacctcttttaattagactataatttacagcttt |
52854230 |
T |
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| Q |
420 |
acagagatttggagttttctcaatatttattgtgtgccccggaaacatgccaa |
472 |
Q |
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| T |
52854231 |
acagagatttggagttttctcaatatttattgtgtgccccggaaacaagccaa |
52854283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 48484650 - 48484747
Alignment:
| Q |
369 |
ttaaagctcaagtaaaagacctcttttaattagactataatttacagctttacagagatttggagttttctcaatatttattgtgtgccccggaaaca |
466 |
Q |
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| T |
48484650 |
ttaaagctcgcgtaaaatacctcttttaattagactataatccacagctttacagagatctggagttttctcaagatttattgtgtgccccggaaaca |
48484747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 48484265 - 48484362
Alignment:
| Q |
20 |
cgatatgcatgctcactgttgtgaagacgagcccacaaggcagctttccaagttgttgaccacccaggaccttcatctcctgtaacataaagcaagaa |
117 |
Q |
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| T |
48484265 |
cgatacgcatgctcactgttatggagatgagcccacaatgcagctttccaagttgttgaccacccaggaccttcgtctcctgtaacacaatgcaagaa |
48484362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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