View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11933_high_4 (Length: 449)

Name: NF11933_high_4
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11933_high_4
NF11933_high_4
[»] scaffold0006 (4 HSPs)
scaffold0006 (19-437)||(80043-80457)
scaffold0006 (53-437)||(128854-129234)
scaffold0006 (225-437)||(215328-215534)
scaffold0006 (53-171)||(215208-215326)
[»] chr1 (7 HSPs)
chr1 (19-244)||(13480148-13480373)
chr1 (285-437)||(19154908-19155063)
chr1 (31-212)||(13701263-13701444)
chr1 (61-212)||(14316623-14316774)
chr1 (31-214)||(13628205-13628388)
chr1 (321-437)||(13600460-13600577)
chr1 (240-385)||(13483827-13483976)
[»] chr6 (1 HSPs)
chr6 (61-260)||(22267322-22267532)


Alignment Details
Target: scaffold0006 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 80043 - 80457
Alignment:
Q  19 tattcgtccattattcagtgtttgtgccactgtggaaacgtcgatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttga 118  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  80043 tattcgtccattgttcagtgtttgtgccactgtggaaacgtagatgatgtggagaagtatttaaggattacgaaagtctgaccgtgggctccaaatttga 80142  T
Q  119 gtatatatgagacgttgatcaccggtcatgtgcagaagggaaacgacgatagtgctcttcagttttgcattcaaatggcctcattggagttgcaacacgg 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||       |||    
T  80143 gtatatatgagacgttgaacaccggtcatgtgcagaagggaaacgacgatagtgctcttcagctttgcattgaaatggcctcattggagt-------cgg 80235  T
Q  219 tttgtgttctgttcccaaaagaggtgaagtgaagatagtaagcctttcaaaagttagtttttgtggtttatgtgaaattcttgcta---agttttaagca 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||    
T  80236 tttgtgttctgttcccaaaagaggtgaagggaagatagtaagcctttcaaaaggtagtttttgtggtttatgtgaaattcttgctactaagttttaagca 80335  T
Q  316 aattcggatcccaacccatcaactcgcgtttatcatatggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaag 415  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80336 aattcggatcccaacccatcaactcgcatttatcatatggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaag 80435  T
Q  416 ttcgaatctacttttaacatct 437  Q
    ||||||||||||||||||||||    
T  80436 ttcgaatctacttttaacatct 80457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 53 - 437
Target Start/End: Original strand, 128854 - 129234
Alignment:
Q  53 gaaacgtcgatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttgagt-atatatgagacgttgatcaccggtcatgtgc 151  Q
    ||||||| ||||||| |||||  ||||||||||||| ||||||| ||| || |||||||||| ||||| ||||||||||||||||||||| |||||| ||    
T  128854 gaaacgttgatgatgcggagagatatttaaggattatgaaaggccgactgttggctccaaatgtgagttatatatgagacgttgatcacctgtcatgcgc 128953  T
Q  152 agaagggaaacgacgatagtgctcttcagttttgcattcaaatggcctcattggagttgcaacacggtttgtgttctgttcccaaaagaggtgaagtgaa 251  Q
    ||||||||||| | ||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |    
T  128954 agaagggaaacaatgatagtgctcttcagctttgcattgaaatggcatcattggagttgcaacacagtttgtgttctgtttccaaaagaggtgaagtgca 129053  T
Q  252 gatagtaagcctttcaaaagttagtttttgtggtttatgtgaaattcttg---ctaagttttaagcaaattcggatcccaacccatcaactcgcgtttat 348  Q
    |||||| |||||||||||||         || |||||||||||||| |||   |||| || ||||||||||||||||| ||||||||| |||||||||||    
T  129054 gatagtgagcctttcaaaag---------gtagtttatgtgaaattgttgttactaacttgtaagcaaattcggatcctaacccatcagctcgcgtttat 129144  T
Q  349 cata-tggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatct 437  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||| |   |||||||||| |||| ||| ||  ||||||||||    
T  129145 catattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattatttttatgttcaaatgtaaatttaacatct 129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 225 - 437
Target Start/End: Original strand, 215328 - 215534
Alignment:
Q  225 ttctgttcccaaaagaggtgaagtgaagatagtaagcctttcaaaagttagtttttgtggtttatgtgaaattcttg---ctaagttttaagcaaattcg 321  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||| ||||||         |||||||||| |||   ||||||| ||||||||||||    
T  215328 ttctgtttccaaaagaggtgaagtgcaggtagtaagcctttcaaaaggtagttt---------atgtgaaattgttgttactaagttgtaagcaaattcg 215418  T
Q  322 gatcccaacccatcaactcgcgtttatcata-tggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaagttcga 420  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |   |||||||||| |||| |    
T  215419 gatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtat-tttcagtttttctatttctagagttgcgattatttttatgttcaa 215517  T
Q  421 atctacttttaacatct 437  Q
    || ||  ||||||||||    
T  215518 atgtaaatttaacatct 215534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 215208 - 215326
Alignment:
Q  53 gaaacgtcgatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttgagtatatatgagacgttgatcaccggtcatgtgca 152  Q
    ||||||| ||||||| | |||  ||||||||||||| ||||||| ||| || |||||||||| |||||||||||||||||||||||||| |||||| |||    
T  215208 gaaacgttgatgatgcgcagagatatttaaggattatgaaaggccgactgttggctccaaatgtgagtatatatgagacgttgatcacccgtcatgcgca 215307  T
Q  153 gaagggaaacgacgatagt 171  Q
    | |||||||| | ||||||    
T  215308 gtagggaaacaatgatagt 215326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 13480148 - 13480373
Alignment:
Q  19 tattcgtccattattcagtgtttgtgccactgtggaaacgtcgatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttga 118  Q
    ||||||||||| ||||| ||||||||| | ||||||||||| ||||||| |||||  ||||||||||||| ||||||| ||| || |||||||||| |||    
T  13480148 tattcgtccatgattcactgtttgtgctattgtggaaacgttgatgatgcggagatatatttaaggattatgaaaggccgactgttggctccaaatgtga 13480247  T
Q  119 gtatatatgagacgttgatcaccggtcatgtgcagaagggaaacgacgatagtgctcttcagttttgcattcaaatggcctcattggagttgcaacacgg 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||||||||| |    
T  13480248 gtatatatgagacgttgatcaccggtcatgcgcagaagggaaacaacgatagtgctcttcagcttcgcattgaaatggcatcattggagttgcaacacag 13480347  T
Q  219 tttgtgttctgttcccaaaagaggtg 244  Q
    || |||||||||||||||||||||||    
T  13480348 ttagtgttctgttcccaaaagaggtg 13480373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 285 - 437
Target Start/End: Complemental strand, 19155063 - 19154908
Alignment:
Q  285 tttatgtgaaattcttg---ctaagttttaagcaaattcggatcccaacccatcaactcgcgtttatcatatggctttgtattttggaggtatgtttcag 381  Q
    |||| ||||||||||||   ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19155063 tttacgtgaaattcttgttactaagttttaagcaaattcggattctaacccatcaactcgcgtttatcatatggctttgtattttggaggtatgtttcag 19154964  T
Q  382 ttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatct 437  Q
    |||| |||||| |||||||||||||||||||| |||||||| ||  ||||||||||    
T  19154963 tttttctatttatagaggtttcattatttttatgttcgaatgtaaatttaacatct 19154908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 13701444 - 13701263
Alignment:
Q  31 attcagtgtttgtgccactgtggaaacgtcgatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttgagtatatatgaga 130  Q
    ||||||||||||||||  |||||||| || ||||||| |||||||||||| ||||||| ||||||  ||  |  ||||||||||||||||||||||||||    
T  13701444 attcagtgtttgtgccgttgtggaaaggttgatgatgcggagaagtatttgaggattatgaaaggtcgattgctggctccaaatttgagtatatatgaga 13701345  T
Q  131 cgttgatcaccggtcatgtgcagaagggaaacgacgatagtgctcttcagttttgcattcaaatggcctcattggagttgca 212  Q
    |||||||  | |||||  ||| ||||||||||| ||| || ||||||||| || ||| | ||||||||||||||||||||||    
T  13701344 cgttgattgctggtcacatgctgaagggaaacgtcgaaagggctcttcagcttcgcaatgaaatggcctcattggagttgca 13701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 14316623 - 14316774
Alignment:
Q  61 gatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttgagtatatatgagacgttgatcaccggtcatgtgcagaagggaa 160  Q
    |||||||  ||||||||||||||||||| ||||||  || ||  |||||||||| ||||||||||||||| ||||||| | | |||  ||||||||||||    
T  14316623 gatgatgcagagaagtatttaaggattatgaaaggtcgatcgctggctccaaatgtgagtatatatgagaagttgatcgctgatcacatgcagaagggaa 14316722  T
Q  161 acgacgatagtgctcttcagttttgcattcaaatggcctcattggagttgca 212  Q
    ||||||| |||||||||||| || ||| | |||||||||||||| |||||||    
T  14316723 acgacgaaagtgctcttcagcttcgcaatgaaatggcctcattgaagttgca 14316774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 13628388 - 13628205
Alignment:
Q  31 attcagtgtttgtgccactgtggaaacgtcgatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttgagtatatatgaga 130  Q
    ||||||||||||||||  |||||||| || ||||||| |||||||| ||| ||||||| ||||||  || ||  |||||||||| |  ||||||||||||    
T  13628388 attcagtgtttgtgccgttgtggaaaggttgatgatgcggagaagtgtttgaggattatgaaaggtcgatcgctggctccaaatgtcggtatatatgaga 13628289  T
Q  131 cgttgatcaccggtcatgtgcagaagggaaacgacgatagtgctcttcagttttgcattcaaatggcctcattggagttgcaac 214  Q
    ||||||||||  |||| |||||||||||||||   | ||| ||| ||||  || ||| | ||||||||||||||||||||||||    
T  13628288 cgttgatcacttgtcacgtgcagaagggaaacagtgttagggcttttcaacttcgcaatgaaatggcctcattggagttgcaac 13628205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 437
Target Start/End: Original strand, 13600460 - 13600577
Alignment:
Q  321 ggatcccaacccatcaactcgcgtttatcatat-ggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaagttcg 419  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |   |||||||||| ||||     
T  13600460 ggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattatttttatgttca 13600559  T
Q  420 aatctacttttaacatct 437  Q
    ||| ||  ||||||||||    
T  13600560 aatgtaaatttaacatct 13600577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 13483827 - 13483976
Alignment:
Q  240 aggtgaagtgaagatagtaagcctttcaaaagttagtttttgtggtttatgtg-aaattcttgctaa---gttttaagcaaattcggatcccaacccatc 335  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||| ||| ||| ||||| ||| |||   ||  |||||||||| ||||||||| |||||    
T  13483827 aggtgaattgaagatagtaagcctttcaaaaggcagtttttgtggattacgtgcaaattgttgttaataagtcgtaagcaaatttggatcccaaaccatc 13483926  T
Q  336 aactcgcgtttatcatatggctttgtattttggaggtatgtttcagtttt 385  Q
    ||||||||||| |||| |||||||||||   |||||||||||| ||||||    
T  13483927 aactcgcgtttgtcatctggctttgtataacggaggtatgtttaagtttt 13483976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 61 - 260
Target Start/End: Complemental strand, 22267532 - 22267322
Alignment:
Q  61 gatgatgtggagaagtatttaaggattacgaaaggctgaccgtgggctccaaatttgagtatatatgagacgttgatcaccggtcatgtgcagaagggaa 160  Q
    ||||||| |||||  ||||||||||||| ||||||| ||| || || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  22267532 gatgatgcggagagatatttaaggattatgaaaggccgactgttggatccaaatgtgagtatatatgagacgttgatcaccggtcatgcgcagaagggaa 22267433  T
Q  161 acgacgatagtg-----------ctcttcagttttgcattcaaatggcctcattggagttgcaacacggtttgtgttctgttcccaaaagaggtgaagtg 249  Q
    || | |||||||           |||||||  |||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  22267432 acaatgatagtgctctgattgtactcttcaactttgcattgaaatggcatcattggagttgcaacacagtttgtgttctattcccaaaagaggtgaagtg 22267333  T
Q  250 aagatagtaag 260  Q
    ||||| |||||    
T  22267332 aagatggtaag 22267322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University