View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11933_high_5 (Length: 412)
Name: NF11933_high_5
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 138 - 397
Target Start/End: Original strand, 28654294 - 28654550
Alignment:
| Q |
138 |
tcgaaacttaatttgattgttcaaattggcaactctaattacgtgaatgcaagaaatctatatccattgtggacttaagatctattctaaccatttctaa |
237 |
Q |
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| T |
28654294 |
tcgaaacttaatttgatagttcaaattggcaactctaattacgtgaatgcaagaaatctatatccattgtggacttaagatctattctaaccatttctaa |
28654393 |
T |
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| Q |
238 |
ttatt-annnnnnnagatattgactcattaatttcatctctaattttaatttaatattgtcatgtatttttatgtacagggaaaagccagctccagctga |
336 |
Q |
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| T |
28654394 |
ttatttatttttttagatattgaatcatt----tcatctctaattttaatttaatattgtcatgtatttttatgtacagggaaaagccagctccagctga |
28654489 |
T |
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| Q |
337 |
actactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaact |
397 |
Q |
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| T |
28654490 |
actactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaact |
28654550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 397
Target Start/End: Original strand, 28635154 - 28635254
Alignment:
| Q |
297 |
catgtatttttatgtacagggaaaagccagctccagctgaactactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaac |
396 |
Q |
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| T |
28635154 |
catgtatttttatgcgcagggaaaagtcagctccagctgaactactactccaacagctgcccaaaagcagaagagataatcaaacaacaagtcactgaac |
28635253 |
T |
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| Q |
397 |
t |
397 |
Q |
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| T |
28635254 |
t |
28635254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 28654204 - 28654272
Alignment:
| Q |
15 |
atcaagccaacacgagattcttatcattagaaaatcatatatttatcacaatcatgtgatccatctaac |
83 |
Q |
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| T |
28654204 |
atcaagccaacacgagattcttatcattagaaaatcatatatttgtcacaatcatgtgatccgtctaac |
28654272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 398
Target Start/End: Original strand, 28662834 - 28662945
Alignment:
| Q |
287 |
ttaatattgtcatgtatttttatgtacagggaaaagccagctccagctgaactactactccaccagctgcccaagagccgaagagataatcaagcagcaa |
386 |
Q |
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| T |
28662834 |
ttaataatgccatgtatttttttgcgtagggaaaagccagctacaattgaactactactccaagagctgcccaaaagcagaagagatcatcaagcaaaaa |
28662933 |
T |
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| Q |
387 |
gtcactgaactg |
398 |
Q |
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| T |
28662934 |
gtcattgaactg |
28662945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 28604784 - 28604874
Alignment:
| Q |
305 |
tttatgtacagggaaaagccagctccagctgaactactactccaccagctgcccaagagccgaagagataatcaagcagcaagtcactgaa |
395 |
Q |
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| T |
28604784 |
tttatgcatagggataagccaactacaggtaaactactactccaagagctgcccaaaagcagaagagatcatcaagcaacaagtcaatgaa |
28604874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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