View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11933_low_10 (Length: 294)
Name: NF11933_low_10
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 28102052 - 28102315
Alignment:
| Q |
13 |
agcagagaggtgagcaacacaaccataaacagggtcagtagccctagcaagagcctcatagcaaagagtaacaacagcatcaagacgcttatgaactgga |
112 |
Q |
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| T |
28102052 |
agcaaagaggtgagcaacacaaccataaacagggtcagtagccctagcaagagcctcatagcaaagagtaacaacagcatcaagacgcttatgaactgga |
28102151 |
T |
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| Q |
113 |
atacgtgtgagtagtttagcagcattgctagcaccaaaaaccttatgaactgcagcaaaatgagcacttccttgacctgatgactcaaaatatggtgcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102152 |
atacgtgtgagtagtttagcagcattgctagcaccaaaaaccttatgaactgcagcaaaatgagcacttccttgacctgatgactcaaaatatggtgcaa |
28102251 |
T |
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| Q |
213 |
atatgcaacaacctttcacacactttcttctcaaaaacttgcaggctccacaaggtccaccacc |
276 |
Q |
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| T |
28102252 |
atatgcaacaacctttcacacactttctcctcaaaaacttgcaggctccacaaggtccaccacc |
28102315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 13287029 - 13286780
Alignment:
| Q |
22 |
gtgagcaacacaaccataaacagggtcagtagccctagcaagagcctcatagcaaagagtaacaacagcatcaagacgcttatgaactggaatacgtgtg |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| || |
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| T |
13287029 |
gtgagcaacacaaccataaacagggtctctagccctagcaagagcttcatagcaaagagtaacaacagcatcaagacgtttatgagctggaatacgcatg |
13286930 |
T |
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| Q |
122 |
agtagtttagcagcattgctagcaccaaaaaccttatgaactgcagcaaaatgagcacttccttgacctgatgactcaaaatatggtgcaaatatgcaac |
221 |
Q |
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| T |
13286929 |
agtaacttagaggcattactagcaccaaacactttatgaactgctgcaaaatgaaccgttccttggtc---tgaatcaaaatatggtgcaaatatg---c |
13286836 |
T |
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| Q |
222 |
aacctttcacacactttcttctcaaaaacttgcaggctccacaaggtccaccacct |
277 |
Q |
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||||||| ||||||||||| |||||||||||||| || |||||||| ||||||||| |
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| T |
13286835 |
aaccttttacacactttctcctcaaaaacttgcaagcaccacaaggcccaccacct |
13286780 |
T |
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