View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11933_low_13 (Length: 250)
Name: NF11933_low_13
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5075161 - 5074921
Alignment:
| Q |
1 |
attactatgttattatatctatgttacttatatttacctcaagtttttacattacaagacatgcttttgttatgtatatacactcttcttttgttcataa |
100 |
Q |
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| T |
5075161 |
attattatgttattatatctatgttacttatatttac-tcaagtttttacattacaagacatgcttttgttatgtatatacactcttcttttgttcataa |
5075063 |
T |
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| Q |
101 |
tttgtatcttaataataagagttttaatttgaaatacagtttatgctgaattaagaaaacaatggaa---actaacaatcaatagaaaaatacacaaaac |
197 |
Q |
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| T |
5075062 |
tttgtatcttaataataagagttttaatttgaaatacagttta-gctgaattaagaaaacaatggaaactactaacaatcaatagaaaaatacacaaaac |
5074964 |
T |
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| Q |
198 |
atgtgatttaaggccagacaaatttcacgcacaattacctttg |
240 |
Q |
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| T |
5074963 |
atgtgatttaaggccagacaaatttcacgcacaattacatttg |
5074921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 5088077 - 5088009
Alignment:
| Q |
111 |
aataataagagttttaatttgaaatacagtttatgctgaattaagaaaacaatggaaactaacaatcaa |
179 |
Q |
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|||||| | |||||||||| |||||||||||||||| ||||| | ||| ||||| ||||| |||||||| |
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| T |
5088077 |
aataattaaagttttaattagaaatacagtttatgcagaattgaaaaaccaatgaaaacttacaatcaa |
5088009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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