View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11933_low_16 (Length: 240)
Name: NF11933_low_16
Description: NF11933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11933_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 16757940 - 16757724
Alignment:
| Q |
1 |
tccatattgttcatgtctcttcatgaacattctttcctctccatatttttagatgtatcactaacaatcttacttgactctaactcaggtatgcaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16757940 |
tccatattgttcatgtctcttcatgaacattctttcctc--catatttttagatatatcactaacaatcttacttgactctaactcaggtatgcaaattt |
16757843 |
T |
|
| Q |
101 |
gtgtcactcagaga----cataaatgtaacttttcaactcaccactattatttcaaacgcagggagtggattcaagatacttgactcgtttgcatgtaca |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16757842 |
gtgtcactcagagaaacacataaatgtaacttttcaactcaccgctattatttcaaacgcagggagtggattcaagatacttgactcgtttgcatgtata |
16757743 |
T |
|
| Q |
197 |
tatgtgagaattacgttac |
215 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
16757742 |
tatgtgaggattacgttac |
16757724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 16753379 - 16753326
Alignment:
| Q |
130 |
tcaactcaccactattatttcaaacgcagggagtggattcaagatacttgactc |
183 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||| || ||||||| |
|
|
| T |
16753379 |
tcaattcaccactattattccaaacacagggagtggattcaagttaattgactc |
16753326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 32741909 - 32741877
Alignment:
| Q |
58 |
tcactaacaatcttacttgactctaactcaggt |
90 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
32741909 |
tcactaacaatctgacttgactctaactcaggt |
32741877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University